Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility

[1] Hardison RC(2012)Genomic approaches towards finding cis-regulatory modules in animals Nat Rev Genet 13 469-83

[2] Taylor J(2008)Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution BMC Bioinf 9 37-72

[3] Janky R(2000)Conserved noncoding sequences are reliable guides to regulatory elements Trends Genet 16 369-10

[4] van Helden J(2002)Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes Science 297 1301-502

[5] Hardison RC(2006)In vivo enhancer analysis of human conserved non-coding sequences Nature 444 499-8

[6] Aparicio S(2005)Highly conserved non-coding sequences are associated with vertebrate development PLoS Biol 3 e7-10

[7] Chapman J(2009)ChIP-seq accurately predicts tissue-specific activity of enhancers Nature 457 854-40

[8] Stupka E(2010)ChIP-seq identification of weakly conserved heart enhancers Nat Genet 42 806-64

[9] Putnam N(2010)Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding Science 328 1036-604

[10] Chia JM(2014)A comparative encyclopedia of DNA elements in the mouse genome Nature 515 355-92

[1] Hardison RC(2012)Genomic approaches towards finding cis-regulatory modules in animals Nat Rev Genet 13 469-83

[2] Taylor J(2008)Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution BMC Bioinf 9 37-72

[3] Janky R(2000)Conserved noncoding sequences are reliable guides to regulatory elements Trends Genet 16 369-10

[4] van Helden J(2002)Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes Science 297 1301-502

[5] Hardison RC(2006)In vivo enhancer analysis of human conserved non-coding sequences Nature 444 499-8

[6] Aparicio S(2005)Highly conserved non-coding sequences are associated with vertebrate development PLoS Biol 3 e7-10

[7] Chapman J(2009)ChIP-seq accurately predicts tissue-specific activity of enhancers Nature 457 854-40

[8] Stupka E(2010)ChIP-seq identification of weakly conserved heart enhancers Nat Genet 42 806-64

[9] Putnam N(2010)Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding Science 328 1036-604

[10] Chia JM(2014)A comparative encyclopedia of DNA elements in the mouse genome Nature 515 355-92