Characterization of the complete plastid genome of Castanopsis hainanensis Merrill

被引：0
作者：
Xiaodan Chen
Jia Yang
Yanci Yang
Xiao Zhang
Xiaomin Du
Guifang Zhao
机构：
[1] Northwest University,Key Laboratory of Resource Biology and Biotechnology in Western China (Ministry of Education), College of Life Sciences
来源：
Conservation Genetics Resources | 2018年 / 10卷
关键词：
Merrill; Endemic species; Plastid genome; Phylogenetic analysis;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
Castanopsis hainanensis Merrill, an endemic species distributed in Hainan, China, is an insular subspecies of Castanopsis indica. In this study, the whole chloroplast (cp) genome of C. hainanensis was determined by Illumina pair-end sequencing. The complete cp genome is 160,631 bp in length, there are a pair of 25,687 bp inverted repeat region separated by one large single copy region of 90,328 and one small single copy region of 18,929. The cp genome encoded 40 transfer RNA genes, eight ribosomal RNA genes and 84 protein-coding genes. The overall GC content of the whole cp genome is 36.8%. Phylogenetic analysis suggests that C. hainanensis is closely related to Castanopsis echinocarpa with strong bootstrap values.
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页码：825 / 828
页数：3
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共 25 条
  • [1] Chevreux B(2004)Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs Genome Res 14 1147-1159
  • [2] Pfsterer T(1987)A rapid DNA isolation procedure for small quantities of fresh leaf tissue Phytochem bull 19 11-15
  • [3] Drescher B(2013)Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach Nucl Acids Res 41 e129-e129
  • [4] Driesel AJ(2013)OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets Nucl Acids Res 41 575-581
  • [5] Müller WE(2012)NGS QC Toolkit: a toolkit for quality control of next generation sequencing data PloS ONE 7 e30619-2729
  • [6] Wetter T(2010)Ancient geographical gaps and paleo-climate shape the phylogeography of an endemic bird in the sky islands of southern India PLoS ONE 5 e13321-undefined
  • [7] Suhai S(2013)MEGA6: molecular evolutionary genetics analysis version 6.0 Mol Biol Evol 30 2725-undefined
  • [8] Doyle JJ(undefined)undefined undefined undefined undefined-undefined
  • [9] Hahn C(undefined)undefined undefined undefined undefined-undefined
  • [10] Bachmann L(undefined)undefined undefined undefined undefined-undefined
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