Retrospective investigation and evolutionary analysis of a novel porcine deltacoronavirus strain detected in Thailand from 2008 to 2015

被引：0
|
作者：
Kepalee Saeng-chuto
Christopher J. Stott
Matthew Wegner
Raweewan Senasuthum
Angkana Tantituvanont
Dachrit Nilubol
机构：
[1] Chulalongkorn University,Department of Veterinary Microbiology, Faculty of Veterinary Science
[2] Chulalongkorn University,Department of Veterinary Pathology, Faculty of Veterinary Science
[3] Chulalongkorn University,Department of Pharmaceutics and Industrial Pharmacy, Faculty of Pharmaceutical Sciences
来源：
Archives of Virology | 2017年 / 162卷
关键词：
Amino Acid Level; Porcine Epidemic Diarrhea Virus; Intestinal Sample; Retrospective Investigation; Bayesian Markov Chain Monte Carlo;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
Porcine deltacoronavirus (PDCoV) in Thailand was first detected in 2015. We performed a retrospective investigation of the presence of PDCoV in intestinal samples collected from piglets with diarrhea in Thailand from 2008 to 2015 using RT-PCR. PDCoV was found to be present as early as February 2013. Phylogenetic analysis demonstrated that all PDCoV variants from Thailand differ from those from other countries and belong to a novel group of PDCoV that is separate from the US and Chinese PDCoV variants. Evolutionary analysis suggested that the Thai PDCoV isolates probably diverged from a different ancestor from that of the Chinese and US PDCoV isolates and that this separation occurred after 1994.
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页码：2103 / 2108
页数：5
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