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- [41] De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identificationBMC Genomics, 15Steven A Yates论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth University,Institute of Biological, Environmental and Rural SciencesMartin T Swain论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth University,Institute of Biological, Environmental and Rural SciencesMatthew J Hegarty论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth University,Institute of Biological, Environmental and Rural SciencesIgor Chernukin论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth University,Institute of Biological, Environmental and Rural SciencesMatthew Lowe论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth University,Institute of Biological, Environmental and Rural SciencesGordon G Allison论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth University,Institute of Biological, Environmental and Rural SciencesTom Ruttink论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth University,Institute of Biological, Environmental and Rural SciencesMichael T Abberton论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth University,Institute of Biological, Environmental and Rural SciencesGlyn Jenkins论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth University,Institute of Biological, Environmental and Rural SciencesLeif Skøt论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth University,Institute of Biological, Environmental and Rural Sciences
- [42] De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identificationBMC GENOMICS, 2014, 15Yates, Steven A.论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, Wales Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, WalesSwain, Martin T.论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3FL, Dyfed, Wales Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, WalesHegarty, Matthew J.论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, Wales Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, WalesChernukin, Igor论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, WalesLowe, Matthew论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, Wales Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, WalesAllison, Gordon G.论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, Wales Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, WalesRuttink, Tom论文数: 0 引用数: 0 h-index: 0机构: Inst Agr & Fisheries Res ILVO, Plant Sci Unit Growth & Dev, B-9090 Melle, Belgium Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, WalesAbberton, Michael T.论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, Wales Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, WalesJenkins, Glyn论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3FL, Dyfed, Wales Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, WalesSkot, Leif论文数: 0 引用数: 0 h-index: 0机构: Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, Wales Aberystwyth Univ, Inst Biol Environm & Rural Sci, Aberystwyth SY23 3EB, Dyfed, Wales
- [43] BOAssembler: A Bayesian Optimization Framework to Improve RNA-Seq Assembly PerformanceALGORITHMS FOR COMPUTATIONAL BIOLOGY (ALCOB 2020), 2020, 12099 : 188 - 197Mao, Shunfu论文数: 0 引用数: 0 h-index: 0机构: Univ Washington, Seattle, WA 98195 USA Univ Washington, Seattle, WA 98195 USAJiang, Yihan论文数: 0 引用数: 0 h-index: 0机构: Univ Washington, Seattle, WA 98195 USA Univ Washington, Seattle, WA 98195 USAMathew, Edwin Basil论文数: 0 引用数: 0 h-index: 0机构: Univ Washington, Seattle, WA 98195 USA Univ Washington, Seattle, WA 98195 USAKannan, Sreeram论文数: 0 引用数: 0 h-index: 0机构: Univ Washington, Seattle, WA 98195 USA Univ Washington, Seattle, WA 98195 USA
- [44] Removal of redundant contigs from de novo RNA-Seq assemblies via homology search improves accurate detection of differentially expressed genesBMC Genomics, 16Hanako Ono论文数: 0 引用数: 0 h-index: 0机构: Tokyo University of Agriculture and Technology,United Graduate School of Agricultural ScienceKazuo Ishii论文数: 0 引用数: 0 h-index: 0机构: Tokyo University of Agriculture and Technology,United Graduate School of Agricultural ScienceToshinori Kozaki论文数: 0 引用数: 0 h-index: 0机构: Tokyo University of Agriculture and Technology,United Graduate School of Agricultural ScienceIsao Ogiwara论文数: 0 引用数: 0 h-index: 0机构: Tokyo University of Agriculture and Technology,United Graduate School of Agricultural ScienceMotoki Kanekatsu论文数: 0 引用数: 0 h-index: 0机构: Tokyo University of Agriculture and Technology,United Graduate School of Agricultural ScienceTetsuya Yamada论文数: 0 引用数: 0 h-index: 0机构: Tokyo University of Agriculture and Technology,United Graduate School of Agricultural Science
- [45] RNA-Seq analysis of soft rush (Juncus effusus): transcriptome sequencing, de novo assembly, annotation, and polymorphism identificationBMC GENOMICS, 2019, 20 (1)Arslan, Muhammad论文数: 0 引用数: 0 h-index: 0机构: UFZ, Helmholtz Ctr Environm Res, Dept Environm Biotechnol, Permoserstr 15, Leipzig, Germany Rhein Westfal TH Aachen, Inst Biol Environm Res 5, Templergraben 55, D-52062 Aachen, Germany UFZ, Helmholtz Ctr Environm Res, Dept Environm Biotechnol, Permoserstr 15, Leipzig, GermanyDevisetty, Upendra Kumar论文数: 0 引用数: 0 h-index: 0机构: Univ Arizona, BIO5 Inst, Tucson, AZ 85719 USA UFZ, Helmholtz Ctr Environm Res, Dept Environm Biotechnol, Permoserstr 15, Leipzig, GermanyPorsch, Martin论文数: 0 引用数: 0 h-index: 0机构: Martin Luther Univ Halle Wittenberg, Inst Comp Sci, Von Seckendorff Pl 1, D-06120 Halle, Saale, Germany Martin Luther Univ Halle Wittenberg, Core Facil Deep Sequencing, Magdeburger Str 2, D-06112 Halle, Saale, Germany UFZ, Helmholtz Ctr Environm Res, Dept Environm Biotechnol, Permoserstr 15, Leipzig, GermanyGrosse, Ivo论文数: 0 引用数: 0 h-index: 0机构: Martin Luther Univ Halle Wittenberg, Inst Comp Sci, Von Seckendorff Pl 1, D-06120 Halle, Saale, Germany German Ctr Integrat Biodivers Res iDiv, Deutsch Pl 5e, D-04103 Leipzig, Germany UFZ, Helmholtz Ctr Environm Res, Dept Environm Biotechnol, Permoserstr 15, Leipzig, GermanyMueller, Jochen A.论文数: 0 引用数: 0 h-index: 0机构: UFZ, Helmholtz Ctr Environm Res, Dept Environm Biotechnol, Permoserstr 15, Leipzig, Germany UFZ, Helmholtz Ctr Environm Res, Dept Environm Biotechnol, Permoserstr 15, Leipzig, GermanyMichalski, Stefan G.论文数: 0 引用数: 0 h-index: 0机构: UFZ, Helmholtz Ctr Environm Res, Dept Community Ecol, Theodor Lieser Str 4, D-06120 Halle, Saale, Germany UFZ, Helmholtz Ctr Environm Res, Dept Environm Biotechnol, Permoserstr 15, Leipzig, Germany
- [46] RNA-Seq analysis of soft rush (Juncus effusus): transcriptome sequencing, de novo assembly, annotation, and polymorphism identificationBMC Genomics, 20Muhammad Arslan论文数: 0 引用数: 0 h-index: 0机构: Department Environmental Biotechnology,Institute for Biology V (Environmental Research)Upendra Kumar Devisetty论文数: 0 引用数: 0 h-index: 0机构: Department Environmental Biotechnology,Institute for Biology V (Environmental Research)Martin Porsch论文数: 0 引用数: 0 h-index: 0机构: Department Environmental Biotechnology,Institute for Biology V (Environmental Research)Ivo Große论文数: 0 引用数: 0 h-index: 0机构: Department Environmental Biotechnology,Institute for Biology V (Environmental Research)Jochen A. Müller论文数: 0 引用数: 0 h-index: 0机构: Department Environmental Biotechnology,Institute for Biology V (Environmental Research)Stefan G. Michalski论文数: 0 引用数: 0 h-index: 0机构: Department Environmental Biotechnology,Institute for Biology V (Environmental Research)
- [47] De novo transcriptome assembly and RNA-Seq expression analysis in blood from beluga Whales of Bristol Bay, AKMARINE GENOMICS, 2017, 35 : 77 - 92Morey, Jeanine S.论文数: 0 引用数: 0 h-index: 0机构: NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USA Jardon & Howard Technol Inc, 2710 Discovery Dr, Orlando, FL 32826 USA NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USAHuntington, Kathy A. Burek论文数: 0 引用数: 0 h-index: 0机构: Alaska Vet Pathol Serv, 23834 Clearing Dr, Eagle River, AK 99577 USA NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USACampbell, Michelle论文数: 0 引用数: 0 h-index: 0机构: Dolphin Quest, 425 Waikoloa Beach Dr, Waikoloa, HI 96738 USA NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USAClauss, Tonya M.论文数: 0 引用数: 0 h-index: 0机构: Georgia Aquarium, 225 Baker Str, Atlanta, GA 30313 USA NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USAGoertz, Caroline E.论文数: 0 引用数: 0 h-index: 0机构: Alaska SeaLife Ctr, POB 1329, Seward, AK 99664 USA NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USAHobbs, Roderick C.论文数: 0 引用数: 0 h-index: 0机构: NOAA, Natl Marine Mammal Lab, Alaska Fisheries Sci Ctr, Natl Marine Fisheries Serv, 7600 Sand Point Way NE, Seattle, WA 95115 USA NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USALunardi, Denise论文数: 0 引用数: 0 h-index: 0机构: Univ Ferrara, Dept Life Sci & Biotechnol, Via L Borsari 46, I-44121 Ferrara, Italy NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USAMoors, Amanda J.论文数: 0 引用数: 0 h-index: 0机构: Natl Inst Stand & Technol, Hollings Marine Lab, 331 Ft Johnson Rd, Charleston, SC 29412 USA NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USANeely, Marion G.论文数: 0 引用数: 0 h-index: 0机构: NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USA Jardon & Howard Technol Inc, 2710 Discovery Dr, Orlando, FL 32826 USA NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USASchwacke, Lori H.论文数: 0 引用数: 0 h-index: 0机构: NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USA Natl Marine Mammal Fdn, 2240 Shelter Isl Dr,Suite 200, San Diego, CA 92106 USA NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USAVan Dolah, Frances M.论文数: 0 引用数: 0 h-index: 0机构: NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USA Coll Charleston, Sch Sci & Math, Dept Biol, 66 George St, Charleston, SC 29424 USA NOAA, Hollings Marine Lab, Natl Ctr Coastal Ocean Sci, Natl Ocean Serv, 331 Ft Johnson Rd, Charleston, SC 29412 USA
- [48] The Vigna unguiculata Gene Expression Atlas (VuGEA) from de novo assembly and quantification of RNA-seq data provides insights into seed maturation mechanismsPLANT JOURNAL, 2016, 88 (02): : 318 - 327Yao, Shaolun论文数: 0 引用数: 0 h-index: 0机构: Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R China Univ Chinese Acad Sci, Beijing 100039, Peoples R China Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R ChinaJiang, Chuan论文数: 0 引用数: 0 h-index: 0机构: Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R China Univ Chinese Acad Sci, Beijing 100039, Peoples R China Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R ChinaHuang, Ziyue论文数: 0 引用数: 0 h-index: 0机构: Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R China Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R ChinaTorres-Jerez, Ivone论文数: 0 引用数: 0 h-index: 0机构: Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R ChinaChang, Junil论文数: 0 引用数: 0 h-index: 0机构: Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA Samuel Roberts Noble Fdn Inc, Comp Serv Dept, Ardmore, OK 73401 USA Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R ChinaZhang, Heng论文数: 0 引用数: 0 h-index: 0机构: Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R China Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R ChinaUdvardi, Michael论文数: 0 引用数: 0 h-index: 0机构: Samuel Roberts Noble Fdn Inc, Div Plant Biol, Ardmore, OK 73401 USA Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R ChinaLiu, Renyi论文数: 0 引用数: 0 h-index: 0机构: Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R China Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R ChinaVerdier, Jerome论文数: 0 引用数: 0 h-index: 0机构: Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R China Chinese Acad Sci, SIBS, Shanghai Ctr Plant Stress Biol, Shanghai 201602, Peoples R China
- [49] Transcriptome assembly from long-read RNA-seq alignments with StringTie2GENOME BIOLOGY, 2019, 20 (01)Kovaka, Sam论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins Univ, Dept Comp Sci, Baltimore, MD 21218 USA Johns Hopkins Univ, Ctr Computat Biol, Whiting Sch Engn, Baltimore, MD 21205 USA Johns Hopkins Univ, Dept Comp Sci, Baltimore, MD 21218 USAZimin, Aleksey, V论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins Univ, Ctr Computat Biol, Whiting Sch Engn, Baltimore, MD 21205 USA Johns Hopkins Univ, Dept Biomed Engn, Baltimore, MD 21218 USA Johns Hopkins Univ, Dept Comp Sci, Baltimore, MD 21218 USAPertea, Geo M.论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins Univ, Ctr Computat Biol, Whiting Sch Engn, Baltimore, MD 21205 USA Johns Hopkins Univ, Dept Biomed Engn, Baltimore, MD 21218 USA Johns Hopkins Univ, Dept Comp Sci, Baltimore, MD 21218 USARazaghi, Roham论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins Univ, Ctr Computat Biol, Whiting Sch Engn, Baltimore, MD 21205 USA Johns Hopkins Univ, Dept Biomed Engn, Baltimore, MD 21218 USA Johns Hopkins Univ, Dept Comp Sci, Baltimore, MD 21218 USASalzberg, Steven L.论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins Univ, Dept Comp Sci, Baltimore, MD 21218 USA Johns Hopkins Univ, Ctr Computat Biol, Whiting Sch Engn, Baltimore, MD 21205 USA Johns Hopkins Univ, Dept Biomed Engn, Baltimore, MD 21218 USA Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Biostat, Baltimore, MD 21205 USA Johns Hopkins Univ, Dept Comp Sci, Baltimore, MD 21218 USAPertea, Mihaela论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins Univ, Ctr Computat Biol, Whiting Sch Engn, Baltimore, MD 21205 USA Johns Hopkins Univ, Dept Biomed Engn, Baltimore, MD 21218 USA Johns Hopkins Univ, Dept Comp Sci, Baltimore, MD 21218 USA
- [50] Transcriptome assembly from long-read RNA-seq alignments with StringTie2Genome Biology, 20Sam Kovaka论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins University,Department of Computer ScienceAleksey V. Zimin论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins University,Department of Computer ScienceGeo M. Pertea论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins University,Department of Computer ScienceRoham Razaghi论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins University,Department of Computer ScienceSteven L. Salzberg论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins University,Department of Computer ScienceMihaela Pertea论文数: 0 引用数: 0 h-index: 0机构: Johns Hopkins University,Department of Computer Science