Comparison of protein phylogeny reconstruction methods using natural protein sequences

被引：0
作者：
M. S. Krivozubov
S. A. Spirin
机构：
[1] Moscow State University,Department of Bioengineering and Bioinformatics, Belozersky Institute of Physical and Chemical Biology
来源：
Moscow University Biological Sciences Bulletin | 2010年 / 65卷 / 4期
关键词：
phylogeny reconstruction; algorithms; protein sequences;
D O I：
10.3103/S0096392510040036
中图分类号：
学科分类号：
摘要：
Comparison of several protein phylogeny reconstruction methods was realized on a set of natural protein sequences. The programs of the PHYLIP package and FastME, PhyML and TreeTop programs were tested. In contrast to several studied programs that used simulated sequences, our results demonstrate the superiority of distance methods over the maximum likelihood method.
引用
收藏
页码：139 / 141
页数：2
相关论文
共 11 条
  • [1] Fitch W.M.(1967)Construction of Phylogenetic Trees Science 155 406-416
  • [2] Margoliash E.(1967)Phylogenetic Analysis: Models and Estimation Procedures Evolution 32 550-570
  • [3] Cavalli-Sforza L.L.(1987)The Neighbor-Joining Method: A New Methods for Reconstructing Phylogenetic Trees Mol. Biol. Evol. 4 406-425
  • [4] Edwards A.W.F.(2005)Comparison of the Accuracies of Several Phylogenetic Methods using Protein and DNA Sequences Mol. Biol. Evol. 22 792-802
  • [5] Saitou N.(1994)A Simulation Comparison of Phylogeny Algorithms under Equal and Unequal Evolutionary Rates Mol. Biol. Evol. 11 459-468
  • [6] Nei M.(2003)A Simple, Fast and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood Syst. Biol. 52 696-704
  • [7] Hall G.B.(undefined)undefined undefined undefined undefined-undefined
  • [8] Kuhner K.M.(undefined)undefined undefined undefined undefined-undefined
  • [9] Felsenstein J.(undefined)undefined undefined undefined undefined-undefined
  • [10] Guindon S.(undefined)undefined undefined undefined undefined-undefined
12