Density-functional study on the equilibria in the ThDP activation

被引:0
作者
Eduardo J. Delgado
Joel B. Alderete
Gonzalo A. Jaña
机构
[1] Universidad de Concepción,Theoretical and Computational Chemistry Group (QTC), Physical Chemistry Department, Facultad de Ciencias Químicas, casilla 160
来源
Journal of Molecular Modeling | 2011年 / 17卷
关键词
Activation; DFT; ThDP; Thermodynamics;
D O I
暂无
中图分类号
学科分类号
摘要
The equilibria among the various ionization and tautomeric states involved in the activation of ThDP is addressed using high level density functional theory calculations, X3LYP/6-311++G(d,p)//X3LYP(PB)/6-31++G(d,p). This study provides the first theoretically derived thermodynamic data for the internal equilibria in the activation of ThDP. The role of the medium polarity on the geometry and thermodynamics of the diverse equilibria of ThDP is addressed. The media chosen are cyclohexane and water, as paradigms of apolar and polar media. The results suggest that all ionization and tautomeric states are accessible during the catalytic cycle, even in the absence of substrate, being APH+ the form required to interconvert the AP and IP tautomers; and the generation of the ylide proceeds via the formation of the IP form. Additionally, the calculated ΔG° values allow to calculate all the equilibrium constants, including the pKC2 for the thiazolium C2 atom whose ionization is believed to initiate the catalytic cycle.
引用
收藏
相关论文
共 41 条
[1]  
Jordan F(2005)Experimental observation of thiamin diphosphate-bound intermediates on enzymes and mechanistic information derived from these observations Bioorg Chem 33 190-215
[2]  
Nemeria NS(2008)Thiamin diphosphate catalysis: Enzymic and nonenzymic covalent intermediates Chem Rev 108 1797-1833
[3]  
Kluger R(1987)Thiamin Diphosphate: A Mechanistic Update on Enzymatic and Nonenzymatic Catalysis of Decarboxylation Chem Rev 87 863-876
[4]  
Tittmann K(1997)How thiamine diphosphate is activated in enzymes Science 275 67-70
[5]  
Kluger R(2008)A DFT study of solvation effects on the tautomeric equilibrium and catalytic ylide generation of thiamin models J Comput Chem 29 1037-1047
[6]  
Kern D(2003)Ab initio and DFT calculations on the initial step in thiamin catalysis J Mol Struct THEOCHEM 630 275-281
[7]  
Kern G(2004)DFT studies on key intermediates in thiamin catalysis Int J Quantum Chem 99 109-114
[8]  
Neef H(2007)The 1 ′,4 ′-iminopyrimidine tautomer of thiamin diphosphate is poised for catalysis in asymmetric active centers on enzymes Proc Natl Acad Sci USA 104 78-82
[9]  
Tittmann K(2007)Elucidation of the chemistry of enzyme-bound thiamin diphosphate prior to substrate binding: defining internal equilibria among tautomeric and ionization states Biochem US 46 10739-10744
[10]  
KillenbergJabs M(2005)Kinetic control of thiamin diphosphate activation in enzymes studied by proton-nitrogen correlated NMR spectroscopy Biochem US 44 8697-8700