ColoWeb: a resource for analysis of colocalization of genomic features

[1] Robertson G(2007)Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing Nat Methods 4 651-7

[2] Hirst M(2014)The UCSC Genome Browser database: 2014 update Nucleic Acids Res 42 D764-70

[3] Bainbridge M(2013)The cell biology of genomes: bringing the double helix to life Cell 152 1209-12

[4] Bilenky M(2012)An integrated encyclopedia of DNA elements in the human genome Nature 489 57-74

[5] Zhao Y(2013)NCBI GEO: archive for functional genomics data sets–update Nucleic Acids Res 41 D991-5

[6] Zeng T(1996)GenomeInspector: a new approach to detect correlation patterns of elements on genomic sequences Comput Appl Biosci 12 405-13

[7] Karolchik D(1996)GenomeInspector: basic software tools for analysis of spatial correlations between genomic structures within megabase sequences Genomics 33 301-4

[8] Barber GP(2014)ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases BMC Genomics 15 284-41

[9] Casper J(2011)seqMINER: an integrated ChIP-seq data interpretation platform Nucleic Acids Res 39 e35-4

[10] Clawson H(2009)EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data Genome Biol 10 R14-49

[1] Robertson G(2007)Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing Nat Methods 4 651-7

[2] Hirst M(2014)The UCSC Genome Browser database: 2014 update Nucleic Acids Res 42 D764-70

[3] Bainbridge M(2013)The cell biology of genomes: bringing the double helix to life Cell 152 1209-12

[4] Bilenky M(2012)An integrated encyclopedia of DNA elements in the human genome Nature 489 57-74

[5] Zhao Y(2013)NCBI GEO: archive for functional genomics data sets–update Nucleic Acids Res 41 D991-5

[6] Zeng T(1996)GenomeInspector: a new approach to detect correlation patterns of elements on genomic sequences Comput Appl Biosci 12 405-13

[7] Karolchik D(1996)GenomeInspector: basic software tools for analysis of spatial correlations between genomic structures within megabase sequences Genomics 33 301-4

[8] Barber GP(2014)ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases BMC Genomics 15 284-41

[9] Casper J(2011)seqMINER: an integrated ChIP-seq data interpretation platform Nucleic Acids Res 39 e35-4

[10] Clawson H(2009)EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data Genome Biol 10 R14-49