Correlating gene and protein expression data using Correlated Factor Analysis

被引:0
作者
Chuen Seng Tan
Agus Salim
Alexander Ploner
Janne Lehtiö
Kee Seng Chia
Yudi Pawitan
机构
[1] Princeton University,Lewis
[2] Karolinska Institutet,Sigler Institute
[3] Yong Loo Lin School of Medicine,Department of Medical Epidemiology and Biostatistics
[4] National University of Singapore and Genome Institute of Singapore,Center for Molecular Epidemiology
[5] Yong Loo Lin School of Medicine,Community, Occupational and Family Medicine
[6] National University of Singapore,Cancer Centrum Karolinska
[7] Karolinska Institutet,Clinical Proteomics
[8] Karolinska Biomics Center,undefined
[9] Karolinska University Hospital,undefined
来源
BMC Bioinformatics | / 10卷
关键词
Gene Ontology; Singular Value Decomposition; Protein Pattern; Proteomic Data; Angular Distance;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 108 条
  • [1] Nie L(2007)Integrative analysis of transcriptomic and proteomic data: challenges, solutions and applications Crit Rev Biotechnol 27 63-75
  • [2] Wu G(2006)Data merging for integrated microarray and proteomic analysis Brief Funct Genomic Proteomic 5 261-272
  • [3] Culley DE(2005)Integrating gene and protein expression data: pattern analysis and profile mining Methods 35 303-314
  • [4] Scholten JCM(2006)Integrated analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: zero-inflated Poisson regression models to predict abundance of undetected proteins Bioinformatics 22 1641-1647
  • [5] Zhang W(2001)Missing value estimation methods for DNA microarrays Bioinformatics 17 520-525
  • [6] Waters KM(2004)LSimpute: accurate estimation of missing values in microarray data with least squares methods Nucleic Acids Res 32 e34-2171
  • [7] Pounds JG(2007)A multivariate analysis approach to the integration of proteomic and gene expression data Proteomics 7 2162-24
  • [8] Thrall BD(2007)Model-based maximum covariance analysis for irregularly observed climatological data J Agric Biol Environ Stat 12 1-16
  • [9] Cox B(2006)Jointly analyzing gene expression and copy number data in breast cancer using data reduction models IEEE/ACM Trans Comput Biol Bioinform 3 2-3356
  • [10] Kislinger T(2003)Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms Proc Natl Acad Sci USA 100 3351-832