Crosstalk of disulfidptosis-related subtypes identifying a prognostic signature to improve prognosis and immunotherapy responses of clear cell renal cell carcinoma patients

被引:3
作者
Ren, Lei [1 ]
Liu, Jinwen [1 ]
Lin, Qingyuan [2 ]
He, Tianyi [3 ]
Huang, Guankai [1 ]
Wang, Weifeng [4 ]
Zhan, Xunhao [1 ]
He, Yu [1 ]
Huang, Bin [1 ]
Mao, Xiaopeng [1 ]
机构
[1] Sun Yat Sen Univ, Affiliated Hosp Sun Yat Sen Univ 1, Dept Urol, Guangzhou, Peoples R China
[2] Sun Yat Sen Univ, Affiliated Hosp Sun Yat Sen Univ 7, Dept Urol, Shenzhen, Peoples R China
[3] First Hosp China Med Univ, Dept Breast Surg, Shenyang, Peoples R China
[4] Sun Yat Sen Univ, Hui Ya Hosp Affiliated Hosp Sun Yat Sen Univ 1, Dept Urol, Huizhou, Peoples R China
来源
BMC GENOMICS | 2024年 / 25卷 / 01期
基金
中国国家自然科学基金;
关键词
Disulfidptosis; Clear cell renal cell carcinoma; Immunotherapy; Immune evasion; Tumor immune microenvironment; TUMOR MUTATIONAL BURDEN; CANCER; THERAPIES;
D O I
10.1186/s12864-024-10307-0
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background Disulfidptosis is a novel form of programmed cell death induced by high SLC7A11 expression under glucose starvation conditions, unlike other known forms of cell death. However, the roles of disulfidptosis in cancers have yet to be comprehensively well-studied, particularly in ccRCC. Methods The expression profiles and somatic mutation of DGs from the TCGA database were investigated. Two DGs clusters were identified by unsupervised consensus clustering analysis, and a disulfidptosis-related prognostic signature (DR score) was constructed. Furthermore, the predictive capacity of the DR score in prognosis was validated by several clinical cohorts. We also developed a nomogram based on the DR score and clinical features. Then, we investigated the differences in the clinicopathological information, TMB, tumor immune landscapes, and biological characteristics between the high- and low-risk groups. We evaluated whether the DR score is a robust tool for predicting immunotherapy response by the TIDE algorithm, immune checkpoint genes, submap analysis, and CheckMate immunotherapy cohort. Results We identified two DGs clusters with significant differences in prognosis, tumor immune landscapes, and clinical features. The DR score has been demonstrated as an independent risk factor by several clinical cohorts. The high-risk group patients had a more complicated tumor immune microenvironment and suffered from more tumor immune evasion in immunotherapy. Moreover, patients in the low-risk group had better prognosis and response to immunotherapy, particularly in anti-PD1 and anti-CTLA-4 inhibitors, which were verified in the CheckMate immunotherapy cohort. Conclusion The DR score can accurately predict the prognosis and immunotherapy response and assist clinicians in providing a personalized treatment regime for ccRCC patients.
引用
收藏
页数:21
相关论文
共 64 条
[41]   PTX3 modulates the immunoflogosis in tumor microenvironment and is a prognostic factor for patients with clear cell renal cell carcinoma [J].
Netti, Giuseppe Stefano ;
Lucarelli, Giuseppe ;
Spadaccino, Federica ;
Castellano, Giuseppe ;
Gigante, Margherita ;
Divella, Chiara ;
Rocchetti, Maria Teresa ;
Rascio, Federica ;
Mancini, Vito ;
Stallone, Giovanni ;
Carrieri, Giuseppe ;
Gesualdo, Loreto ;
Battaglia, Michele ;
Ranieri, Elena .
AGING-US, 2020, 12 (08) :7585-7602
[42]  
Ragone Rosa, 2016, Diseases, V4, DOI 10.3390/diseases4010007
[43]   An innovative model based on N7-methylguanosine-related lncRNAs for forecasting prognosis and tumor immune landscape in bladder cancer [J].
Ren, Lei ;
Yang, Xu ;
Liu, Jinwen ;
Wang, Weifeng ;
Liu, Zixiong ;
Lin, Qingyuan ;
Huang, Bin ;
Pan, Jincheng ;
Mao, Xiaopeng .
CANCER CELL INTERNATIONAL, 2023, 23 (01)
[44]   Prognostic and predictive biomarkers for immunotherapy in advanced renal cell carcinoma [J].
Rosellini, Matteo ;
Marchetti, Andrea ;
Mollica, Veronica ;
Rizzo, Alessandro ;
Santoni, Matteo ;
Massari, Francesco .
NATURE REVIEWS UROLOGY, 2023, 20 (03) :133-157
[45]   Integrated molecular analysis of clear-cell renal cell carcinoma [J].
Sato, Yusuke ;
Yoshizato, Tetsuichi ;
Shiraishi, Yuichi ;
Maekawa, Shigekatsu ;
Okuno, Yusuke ;
Kamura, Takumi ;
Shimamura, Teppei ;
Sato-Otsubo, Aiko ;
Nagae, Genta ;
Suzuki, Hiromichi ;
Nagata, Yasunobu ;
Yoshida, Kenichi ;
Kon, Ayana ;
Suzuki, Yutaka ;
Chiba, Kenichi ;
Tanaka, Hiroko ;
Niida, Atsushi ;
Fujimoto, Akihiro ;
Tsunoda, Tatsuhiko ;
Morikawa, Teppei ;
Maeda, Daichi ;
Kume, Haruki ;
Sugano, Sumio ;
Fukayama, Masashi ;
Aburatani, Hiroyuki ;
Sanada, Masashi ;
Miyano, Satoru ;
Homma, Yukio ;
Ogawa, Seishi .
NATURE GENETICS, 2013, 45 (08) :860-U191
[46]   Neoantigens in cancer immunotherapy [J].
Schumacher, Ton N. ;
Schreiber, Robert D. .
SCIENCE, 2015, 348 (6230) :69-74
[47]   Efficacy of PD-1 or PD-L1 inhibitors and PD-L1 expression status in cancer: meta-analysis [J].
Shen, Xian ;
Zhao, Bin .
BMJ-BRITISH MEDICAL JOURNAL, 2018, 362
[48]   Crosstalk of ferroptosis regulators and tumor immunity in pancreatic adenocarcinoma: novel perspective to mRNA vaccines and personalized immunotherapy [J].
Shi, Yanlong ;
Wang, Yizhu ;
Dong, Hui ;
Niu, Kaiyi ;
Zhang, Wenning ;
Feng, Kun ;
Yang, Rui ;
Zhang, Yewei .
APOPTOSIS, 2023, 28 (9-10) :1423-1435
[49]   Understanding Pathologic Variants of Renal Cell Carcinoma: Distilling Therapeutic Opportunities from Biologic Complexity [J].
Shuch, Brian ;
Amin, Ali ;
Armstrong, Andrew J. ;
Eble, John N. ;
Ficarra, Vincenzo ;
Lopez-Beltran, Antonio ;
Martignoni, Guido ;
Rini, Brian I. ;
Kutikov, Alexander .
EUROPEAN UROLOGY, 2015, 67 (01) :85-97
[50]   Renal cell carcinoma management: A step to nano-chemoprevention [J].
Siddiqi, Aisha ;
Rani, Madhu ;
Bansal, Preeti ;
Rizvi, M. Moshahid Alam .
LIFE SCIENCES, 2022, 308