High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556T

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作者
Sofie E. De Meyer
Rui Tian
Rekha Seshadri
Natalia Ivanova
Amrita Pati
Victor Markowitz
Tanja Woyke
Ron Yates
John Howieson
Nikos Kyrpides
Wayne Reeve
机构
[1] Murdoch University,Centre for Rhizobium Studies
[2] DOE Joint Genome Institute,Biological Data Management and Technology Center
[3] Lawrence Berkeley National Laboratory,Department of Biological Sciences, Faculty of Science
[4] Department of Agriculture and Food,undefined
[5] King Abdulaziz University,undefined
来源
Standards in Genomic Sciences | / 10卷
关键词
Root-nodule bacteria; Nitrogen fixation; South Africa; GEBA-RNB;
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摘要
Burkholderia dilworthii strain WSM3556T is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N2-fixing root nodule of Lebeckia ambigua collected near Grotto Bay Nature Reserve, in the Western Cape of South Africa, in October 2004. This plant persists in infertile and deep sandy soils with acidic pH, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. WSM3556T thus represents a potential inoculant quality strain for L. ambigua for which we describe the general features, together with genome sequence and annotation. The 7,679,067 bp high-quality permanent draft genome is arranged in 140 scaffolds of 141 contigs, contains 7,059 protein-coding genes and 64 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.
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