Genetic evaluation of domestication-related traits in rice: implications for the archaeobotany of rice origins

被引:0
作者
Ryo Ishikawa
Cristina C. Castillo
Dorian Q. Fuller
机构
[1] Kobe University,Laboratory of Plant Breeding, Graduate School of Agricultural Science
[2] University College London,Institute of Archaeology
[3] Northwest University,School of Cultural Heritage
来源
Archaeological and Anthropological Sciences | 2020年 / 12卷
关键词
Palaeoethnobotany; Domestication; Genome; Seed shattering; Awn;
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摘要
Domestication is the process in which preferred genetic changes in wild plants and animals have been selected by humans. In other words, domesticated plants have become adapted to being part of human-managed ecosystems. Asian cultivated rice, Oryza sativa L., is one of the most important crops in the world and is known to have been domesticated from its wild ancestor, O. rufipogon. Many morphological changes in cultivated rice have been beneficial to humans in terms of increased efficiency of cultivation and yield that supported the development of human civilisations. The genetic mechanisms of these changes have been extensively studied since rice genome sequences were determined, and based on genome analyses, the origin of rice has been widely discussed. Most of the domestication-related traits and genes are, however, often evaluated based on the genetic background of cultivated rice, leading to misinterpretation of rice domestication. Here, we review several genetic changes and discuss the importance of evaluating these traits in the wild rice genetic background to understand the process of rice domestication. In this review, we also provide a phenotypic evaluation of domestication-related traits.
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共 43 条
[21]   Comparison of methane metabolism in the rhizomicrobiomes of wild and related cultivated rice accessions reveals a strong impact of crop domestication [J].
Tian, Lei ;
Chang, Jingjing ;
Shi, Shaohua ;
Li Ji ;
Zhang, Jianfeng ;
Sun, Yu ;
Li, Xiaojie ;
Li, Xiujun ;
Xie, Hongwei ;
Cai, Yaohui ;
Chen, Dazhou ;
Wang, Jilin ;
van Veen, Johannes A. ;
Kuramae, Eiko E. ;
Tran, Lam-Son Phan ;
Tian, Chunjie .
SCIENCE OF THE TOTAL ENVIRONMENT, 2022, 803
[22]   Domestication of rice may have changed its arbuscular mycorrhizal properties by modifying phosphorus nutrition-related traits and decreasing symbiotic compatibility [J].
Li, Yingwei ;
Chen, Hanwen ;
Gu, Ling ;
Wu, Jingwen ;
Zheng, Xiutan ;
Fan, Zhilan ;
Pan, Dajian ;
Li, Jin-tian ;
Shu, Wensheng ;
Rosendahl, Soren ;
Wang, Yutao .
NEW PHYTOLOGIST, 2024, 243 (04) :1554-1570
[23]   Genetic Dissection of Epistatic Interactions Contributing Yield-Related Agronomic Traits in Rice Using the Compressed Mixed Model [J].
Li, Ling ;
Wu, Xinyi ;
Chen, Juncong ;
Wang, Shengmeng ;
Wan, Yuxuan ;
Ji, Hanbing ;
Wen, Yangjun ;
Zhang, Jin .
PLANTS-BASEL, 2022, 11 (19)
[24]   Research progress on the divergence and genetic basis of agronomic traits in xian and geng rice [J].
Jiang, Linlin ;
Wu, Lian ;
Wang, Yun ;
Xu, Quan ;
Xu, Zhengjin ;
Chen, Wenfu .
CROP JOURNAL, 2022, 10 (04) :924-931
[25]   Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.) [J].
Kawakami, Shin-ichi ;
Ebana, Kaworu ;
Nishikawa, Tomotaro ;
Sato, Yo-ichiro ;
Vaughan, Duncan A. ;
Kadowaki, Koh-ichi .
GENOME, 2007, 50 (02) :180-187
[26]   Studies on agronomic traits of African rice (Oryza glaberrima Steud) .3. Some grain morphological aspects of domestication and decrement [J].
Katayama, TC ;
Sumi, A .
JAPANESE JOURNAL OF CROP SCIENCE, 1995, 64 (04) :807-814
[27]   Characterization of Introgression Lines for Yield-related Traits with Indica-type Rice Variety IR64 Genetic Background [J].
Fujita, Daisuke ;
Santos, Rizza Eve M. ;
Ebron, Leodegario A. ;
Telebanco-Yanoria, Mary J. ;
Kato, Hiroshi ;
Kobayashi, Sohei ;
Uga, Yusaku ;
Araki, Etsuko ;
Takai, Toshiyuki ;
Tsunematsu, Hiroshi ;
Imbe, Tokio ;
Khush, Gurdev S. ;
Brar, Darshan S. ;
Fukuta, Yoshimichi ;
Kobayashi, Nobuya .
JARQ-JAPAN AGRICULTURAL RESEARCH QUARTERLY, 2010, 44 (03) :277-290
[28]   QTL dissection of agronomic and domestication traits using introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (O. sativa L.) background [J].
Ping-Rong Yuan ;
Hyun-Jung Kim ;
Qiong-Hua Chen ;
Hong-Guang Ju ;
Seung-Joon Lee ;
Shi-Dong Ji ;
Sang-Nag Ahn .
Journal of Crop Science and Biotechnology, 2009, 12 (4) :245-252
[29]   Evaluation of agro-morphological traits, seed characterization and genetic diversity of local rice (Oryza sativa L.) varieties of Pakistan [J].
Fazal, Urooj ;
Ud Din, Israr ;
Khan, Amir Muhammad ;
Khan, Fahim Ullah ;
Khan, Mudassar Nawaz ;
Iqbal, Navid ;
Ibrahim, Muhammad ;
Bangash, Sajid Ali Khan .
GENETIC RESOURCES AND CROP EVOLUTION, 2023, 70 (03) :935-949
[30]   Dissection of heterosis for yield and related traits using populations derived from introgression lines in rice [J].
Xiang, Chao ;
Zhang, Hongjun ;
Wang, Hui ;
Wei, Shaobo ;
Fu, Binying ;
Xia, Jiafa ;
Li, Zefu ;
Gao, Yongming ;
Ye, Guoyou .
CROP JOURNAL, 2016, 4 (06) :468-478