Recombinase Polymerase Amplification for Rapid Detection of Human Bacterial Pneumonia Pathogens

被引:0
作者
S. A. Lapa
S. A. Surzhikov
S. A. Blagodatskikh
V. E. Shershov
A. V. Chudinov
机构
[1] Engelhardt Institute of Molecular Biology,
[2] Russian Academy of Sciences,undefined
[3] Scientific Center of Applied Microbiology and Biotechnology,undefined
来源
Molecular Biology | 2023年 / 57卷
关键词
recombinase polymerase amplification; RPA; bacterial pneumonia;
D O I
暂无
中图分类号
学科分类号
摘要
A diagnostic system based on recombinase polymerase amplification (RPA) has been developed to identify six bacterial pathogens of human pneumonia. Species-specific primers have been designed and optimized to conduct a multiplex reaction in one common volume. Labeled primers were used for reliable discrimination of amplification products that are similar in size. Identification of the pathogen was carried out by visual analysis of an electrophoregram. The analytical sensitivity of the developed multiplex RPA was 102–103 copies of DNA. The specificity of the system was determined by the absence of cross-amplification of the studied DNA samples of pneumonia pathogens for each pair of primers, as well as for the DNA of Mycobacterium tuberculosis H37rv, and amounted to 100%. The execution time of the analysis is less than an 1 h, including the electrophoretic reaction control. The test system can be used in specialized clinical laboratories for rapid analysis of samples from patients with suspected pneumonia.
引用
收藏
页码:544 / 549
页数:5
相关论文
共 88 条
  • [1] Campigotto A.(2015)Influenza-associated bacterial pneumonia; managing and controlling infection on two fronts Expert. Rev. Anti. Infect. Ther. 13 55-68
  • [2] Mubareka S.(1996)Bacterial pneumonia associated with HIV-1 infection Clin. Chest. Med. 17 713-723
  • [3] Noskin G.A.(2017)Bacterial pneumonia in older adults Infect. Dis. Clin. North Am. 31 689-713
  • [4] Glassroth J.(2020)Community-acquired bacterial pneumonia in adults: an update Indian J. Med. Res. 151 287-302
  • [5] Henig O.(2011)British thoracic society standards of care committee. British thoracic society guidelines for the management of community acquired pneumonia in children: update 2011 Thorax. 66 ii1-ii23
  • [6] Kaye K.S.(2006)The atypical pneumonias: clinical diagnosis and importance Clin. Microbiol. Infect 12 12-24
  • [7] Eshwara V.K.(2020)Diagnosis of severe respiratory infections in immunocompromised patients Intensive Care Med 46 298-314
  • [8] Mukhopadhyay C.(2003)Use and limitations of clinical and radiologic diagnosis of pneumonia Semin. Respir. Infect. 18 72-79
  • [9] Rello J.(2019)The quality of sputum specimens as a predictor of isolated bacteria from patients with lower respiratory tract infections at a tertiary referral hospital, Denpasar, Bali-Indonesia Front. Med. 6 64-772
  • [10] Harris M.(2006)Role of laboratory variables in differentiating SARS-coronavirus from other causes of community-acquired pneumonia within the first 72 h of hospitalization Eur. J. Clin. Microbiol. Infect. Dis 25 765-17