A novel machine learning-based approach for the computational functional assessment of pharmacogenomic variants

被引:0
作者
Maria-Theodora Pandi
Maria Koromina
Iordanis Tsafaridis
Sotirios Patsilinakos
Evangelos Christoforou
Peter J. van der Spek
George P. Patrinos
机构
[1] Erasmus University Medical Center,Laboratory of Pharmacogenomics and Individualized Therapy, Department of Pharmacy, School of Health Sciences
[2] Faculty of Medicine and Health Sciences,Zayed Center of Health Sciences
[3] Department of Pathology,Department of Pathology, College of Medicine and Health Sciences
[4] Bioinformatics Unit,undefined
[5] University of Patras,undefined
[6] The Golden Helix Foundation,undefined
[7] Katharsis Technologies Inc.,undefined
[8] Konstantopouleion General Hospital,undefined
[9] United Arab Emirates University,undefined
[10] United Arab Emirates University,undefined
来源
Human Genomics | / 15卷
关键词
Machine learning; Computational approaches; Functional prediction; Pharmacogenomic variants;
D O I
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[51]  
Zhang B(2016)Imputation with the R Package VIM J Stat Software 74 1-undefined
[52]  
Lauschke VM(2017)DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins Nucleic Acids Res 45 W201-undefined
[53]  
Ng PC(2017)PERCH: a unified framework for disease gene prioritization Hum Mutat 38 243-undefined
[54]  
Henikoff S(2015)A method for calculating probabilities of fitness consequences for point mutations across the human genome Nat Genet 47 276-undefined
[55]  
Choi Y(2020)LIST-S2: taxonomy based sorting of deleterious missense mutations across species Nucleic Acids Res 48 W154-undefined
[56]  
Sims G(2009)InterPro: the integrative protein signature database Nucleic Acids Res 37 D211-undefined
[57]  
Murphy S(2012)A systematic survey of loss-of-function variants in human protein-coding genes Science. 335 823-undefined
[58]  
Miller J(2001)Random forests Machine Learning. 45 5-undefined
[59]  
Chan A(2002)Classification and regression by randomforest R News. 2 18-undefined
[60]  
Adzhubei I(2013)adabag: An R package for classification with boosting and bagging J Stat Software 54 1-undefined