The complete chloroplast genome sequence of Fokienia hodginsii (Cupressaceae), an endangered tree

被引：0
作者：
Xiaomin Du
Xiaodan Chen
Xiaolong Ren
Guiliang Xin
Guolun Jia
Wenzhe Liu
机构：
[1] Northwest University,Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, School of Life Science
来源：
Conservation Genetics Resources | 2018年 / 10卷
关键词：
Chloroplast genome; Phylogenetic analysis; Species conservation;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
Fokienia hodginsii: is (Cupressaceae) an endangered tree species endemic to China, Vietnam and Laos. The complete chloroplast (cp) genome sequence of the F. hodginsii was determined using Illumina pair-end sequencing data. The circular genome is 127,777 bp long with 116 single copy genes and two duplicated genes (trnI-CAU, trnQ-UUG). The genome contains 120 genes, including 83 protein-coding genes, four ribosomal RNA genes and 33 transfer RNA genes. Fifteen genes have a single intron, and two genes (rps12 and ycf3) have a couple of introns. Its cp genome does not contain canonical IRs, and the overall A + T content is 65.0%. Further, phylogenetic analysis suggested that F. hodginsii is closely related to species of Chamaecyparis lawsoniana.
引用
收藏
页码：813 / 815
页数：2
相关论文
共 28 条
[1]  
Hahn C(2013)Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads‒a baiting and iterative mapping approach Nucleic Acids Res 41 e129-W581
[2]  
Bachmann L(2013)OrganellarGenomeDRAW‒a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets Nucleic Acids Res 41 W575-15844
[3]  
Chevreux B(2012)NGS QC Toolkit: a toolkit for quality control of next generation sequencing data PLoS ONE 7 e30619-2729
[4]  
Lohse M(2017)Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae) Sci Rep 7 41005-66
[5]  
Drechsel O(2011)Genetic diversity of an endangered species, Afr J Biotechnol 10 15838-undefined
[6]  
Kahlau S(2013) (Cupressaceae) Mol Biol Evol 30 2725-undefined
[7]  
Bock R(2008)MEGA6: molecular evolutionary genetics analysis version 6.0 J Anhui Agric Sci 17 102-undefined
[8]  
Patel RK(1994)Study on the chemical constituents and biological activities of volatile oil from J Fujian For Sci Technol 21 62-undefined
[9]  
Jain M(undefined) A precious timber species‒ undefined undefined undefined-undefined
[10]  
Qu XJ(undefined)undefined undefined undefined undefined-undefined
123