A theoretical investigation of DNA dynamics and desolvation kinetics for zinc finger proteinZif268

被引:0
|
作者
Shayoni Dutta
Yoshita Agrawal
Aditi Mishra
Jaspreet Kaur Dhanjal
Durai Sundar
机构
[1] DBT-AIST International Laboratory for Advanced Biomedicine (DAILAB),Department of Biochemical Engineering and Biotechnology
[2] Indian Institute of Technology (IIT) Delhi,undefined
来源
BMC Genomics | / 16卷
关键词
ZFP-Zinc finger proteins; ns-nanosecond; desolvation energy; DNA deformation;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 34 条
  • [1] A theoretical investigation of DNA dynamics and desolvation kinetics for zinc finger proteinZif268
    Dutta, Shayoni
    Agrawal, Yoshita
    Mishra, Aditi
    Dhanjal, Jaspreet Kaur
    Sundar, Durai
    BMC GENOMICS, 2015, 16
  • [2] ZINC FINGER DNA RECOGNITION - CRYSTAL-STRUCTURE OF A ZIF268-DNA COMPLEX AT 2.1-A
    PAVLETICH, NP
    PABO, CO
    SCIENCE, 1991, 252 (5007) : 809 - 817
  • [3] High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger DNA recognition
    Elrod-Erickson, M
    Benson, TE
    Pabo, CO
    STRUCTURE, 1998, 6 (04) : 451 - 464
  • [4] Molecular dynamics simulations on a zinc-finger protein: DNA complex
    Cooney, MG
    Miaskiewicz, K
    Shibata, M
    Miller, JH
    BIOMACROMOLECULES: FROM 3-D STRUCTURE TO APPLICATIONS, 1997, : 145 - 152
  • [5] Rearrangement of side-chains in a zif268 mutant highlights the complexities of zinc finger-DNA recognition
    Miller, JC
    Pabo, CO
    JOURNAL OF MOLECULAR BIOLOGY, 2001, 313 (02) : 309 - 315
  • [6] Molecular dynamics modelling of the interaction of a synthetic zinc-finger miniprotein with DNA
    Rodriguez, Jessica
    Battistini, Federica
    Learte-Aymami, Soraya
    Orozco, Modesto
    Mascarenas, Jose L.
    RSC CHEMICAL BIOLOGY, 2023, 4 (07): : 486 - 493
  • [7] NMR and molecular dynamics studies of the hydration of a zinc finger-DNA complex
    Tsui, V
    Radhakrishnan, I
    Wright, PE
    Case, DA
    JOURNAL OF MOLECULAR BIOLOGY, 2000, 302 (05) : 1101 - 1117
  • [8] Zif268 protein-DNA complex refined at 1.6 angstrom: A model system for understanding zinc finger-DNA interactions
    ElrodErickson, M
    Rould, MA
    Nekludova, L
    Pabo, CO
    STRUCTURE, 1996, 4 (10) : 1171 - 1180
  • [9] Binding studies with mutants of Zif268 - Contribution of individual side chains to binding affinity and specificity in the Zif268 zinc finger-DNA complex
    Elrod-Erickson, M
    Pabo, CO
    JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (27) : 19281 - 19285