A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing

[41] Lunn JE(2016)PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme Bioenerg Res 10 400-1092

[42] McIntyre CL(2014)High-throughput profiling of the fiber and sugar composition of sugarcane biomass Methods Mol Biol 1099 23-3152

[43] Goode ML(2005)RNA extraction from developing or mature wheat seeds Bioorg Khim 31 186-297

[44] Cordeiro G(2002)A method for the preparation of normalized cDNA libraries enriched with full-length sequences Genome Res 12 1935-1067

[45] Bundock P(2013)A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas Proc Natl Acad Sci U S A 110 E4821-3212

[46] Eliott F(2014)Characterization of the human ESC transcriptome by hybrid sequencing Bioinformatics 30 3004-D89

[47] Henry RJ(2014)Proovread: large-scale high-accuracy PacBio correction through iterative short read consensus Bioinformatics 30 3506-D221

[48] Casu RE(2015)LoRDEC: accurate and efficient long read error correction BMC Genomics 16 1-W297

[49] Bonnett GD(2011)Optimal assembly strategies of transcriptome related to ploidies of eukaryotic organisms Nat Biotech 29 644-W185

[50] Aitken KS(2012)Full-length transcriptome assembly from RNA-Seq data without a reference genome Bioinformatics 28 1086-1875

[41] Lunn JE(2016)PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme Bioenerg Res 10 400-1092

[42] McIntyre CL(2014)High-throughput profiling of the fiber and sugar composition of sugarcane biomass Methods Mol Biol 1099 23-3152

[43] Goode ML(2005)RNA extraction from developing or mature wheat seeds Bioorg Khim 31 186-297

[44] Cordeiro G(2002)A method for the preparation of normalized cDNA libraries enriched with full-length sequences Genome Res 12 1935-1067

[45] Bundock P(2013)A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas Proc Natl Acad Sci U S A 110 E4821-3212

[46] Eliott F(2014)Characterization of the human ESC transcriptome by hybrid sequencing Bioinformatics 30 3004-D89

[47] Henry RJ(2014)Proovread: large-scale high-accuracy PacBio correction through iterative short read consensus Bioinformatics 30 3506-D221

[48] Casu RE(2015)LoRDEC: accurate and efficient long read error correction BMC Genomics 16 1-W297

[49] Bonnett GD(2011)Optimal assembly strategies of transcriptome related to ploidies of eukaryotic organisms Nat Biotech 29 644-W185

[50] Aitken KS(2012)Full-length transcriptome assembly from RNA-Seq data without a reference genome Bioinformatics 28 1086-1875