Snapshot of iron response in Shewanella oneidensis by gene network reconstruction

被引:0
|
作者
Yunfeng Yang
Daniel P Harris
Feng Luo
Wenlu Xiong
Marcin Joachimiak
Liyou Wu
Paramvir Dehal
Janet Jacobsen
Zamin Yang
Anthony V Palumbo
Adam P Arkin
Jizhong Zhou
机构
[1] Oak Ridge National Laboratory,Biosciences Division
[2] Clemson University,School of Computing
[3] Lawrence Berkeley National Laboratory,Physical Biosciences Division
[4] University of Oklahoma,Institute for Environmental Genomics, and Department of Botany and Microbiology
[5] Lawrence Berkeley National Laboratory,Computational Research Division
[6] University of California,Department of Bioengineering
来源
BMC Genomics | / 10卷
关键词
TMAO; Random Matrix Theory; Dipyridyl; Iron Depletion; Iron Acquisition System;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Snapshot of iron response in Shewanella oneidensis by gene network reconstruction
    Yang, Yunfeng
    Harris, Daniel P.
    Luo, Feng
    Xiong, Wenlu
    Joachimiak, Marcin
    Wu, Liyou
    Dehal, Paramvir
    Jacobsen, Janet
    Yang, Zamin
    Palumbo, Anthony V.
    Arkin, Adam P.
    Zhou, Jizhong
    BMC GENOMICS, 2009, 10
  • [2] Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response
    Yang, Yunfeng
    Harris, Daniel P.
    Luo, Feng
    Wu, Liyou
    Parsons, Andrea B.
    Palumbo, Anthony V.
    Zhou, Jizhong
    BMC GENOMICS, 2008, 9 (Suppl 1)
  • [3] Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response
    Yunfeng Yang
    Daniel P Harris
    Feng Luo
    Liyou Wu
    Andrea B Parsons
    Anthony V Palumbo
    Jizhong Zhou
    BMC Genomics, 9
  • [4] A putative azoreductase gene is involved in the Shewanella oneidensis response to heavy metal stress
    Irina Mugerfeld
    Brittany A. Law
    Gene S. Wickham
    Dorothea K. Thompson
    Applied Microbiology and Biotechnology, 2009, 82 : 1131 - 1141
  • [5] A putative azoreductase gene is involved in the Shewanella oneidensis response to heavy metal stress
    Mugerfeld, Irina
    Law, Brittany A.
    Wickham, Gene S.
    Thompson, Dorothea K.
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2009, 82 (06) : 1131 - 1141
  • [6] Cellular response of Shewanella oneidensis to strontium stress
    Brown, SD
    Martin, M
    Deshpande, S
    Seal, S
    Huang, K
    Alm, E
    Yang, YF
    Wu, LY
    Yan, TF
    Liu, XD
    Arkin, A
    Chourey, K
    Zhou, JZ
    Thompson, DK
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (01) : 890 - 900
  • [7] Reconstruction of extracellular respiratory pathways for iron(III) reduction in Shewanella oneidensis strain MR-1
    Coursolle, Dan
    Gralnick, Jeffrey A.
    FRONTIERS IN MICROBIOLOGY, 2012, 3
  • [8] Molecular dynamics of the Shewanella oneidensis response to chromate stress
    Brown, Steven D.
    Thompson, Melissa R.
    VerBerkmoes, Nathan C.
    Chourey, Karuna
    Shah, Manesh
    Zhou, Jizhong
    Hettich, Robert L.
    Thompson, Dorothea K.
    MOLECULAR & CELLULAR PROTEOMICS, 2006, 5 (06) : 1054 - 1071
  • [9] Global transcriptome analysis of the heat shock response of Shewanella oneidensis
    Gao, HC
    Wang, Y
    Liu, XD
    Yan, TF
    Wu, LY
    Alm, E
    Arkin, A
    Thompson, DK
    Zhou, JZ
    JOURNAL OF BACTERIOLOGY, 2004, 186 (22) : 7796 - 7803
  • [10] Dissolution morphology of iron (oxy)(hydr)oxides exposed to Shewanella oneidensis
    Stack, A. G.
    Zhang, M.
    Ginn, B. R.
    Dichristina, T. J.
    GEOCHIMICA ET COSMOCHIMICA ACTA, 2009, 73 (13) : A1261 - A1261