The Role of Solvent in Protein Folding and in Aggregation

被引:0
作者
S.M. Vaiana
M. Manno
A. Emanuele
M.B. Palma-Vittorelli
M.U. Palma
机构
[1] University of Palermo,INFM, Progetto Sud and Unita' di Palermo, at Department of Physical and Astronomical Sciences
来源
Journal of Biological Physics | 2001年 / 27卷
关键词
Computational modeling; energy landscapes; hydration; hydrophobic interactions; protein aggregation; protein conformational changes; protein folding; protein-solvent interactions; spinodal and coexistence;
D O I
暂无
中图分类号
学科分类号
摘要
We discuss features of the effect of solvent on protein folding andaggregation, highlighting the physics related to the particulate nature and the peculiar structure of the aqueous solvent, and the biological significance of interactions between solvent and proteins. To this purpose we use a generalized energy landscape of extended dimensionality. A closer look at the properties of solvent induced interactions and forces proves useful for understanding the physical grounds of `ad hoc' interactions and for devising realistic ways of accounting for solvent effects. The solvent has long been known to be a crucially important part of biological systems, and times appear mature for it to be adequately accounted for in the protein folding problem. Use of the extended dimensionality energy landscape helpseliciting the possibility of coupling among conformational changes and aggregation, such as proved by experimental data in the literature.
引用
收藏
页码:133 / 145
页数:12
相关论文
共 126 条
[1]  
Dobson C.M.(1999)The Fudamentals of Protein Folding: Bringing Together Theory and Experiment Curr. Opin. Struct. Biol. 9 92-101
[2]  
Karplus M.(2000)Understanding Protein Folding via Free-energy Surphaces from Theory and Experiment TIBS 25 331-339
[3]  
Dinner A.R.(1998)Protein Folding in the Landscape Perspective: Chevron Plots and non-Arrhenius Kinetics Proteins 30 2-33
[4]  
Šali A.(1997)Theory of Protein Folding: the Energy Landscape Perspective Ann. Rev. Phys. Chem. 48 539-594
[5]  
Smith L.J.(1996)Statistical Mechanics of a Correlated Energy Landscape Model for Protein Folding Funnels J. Chem. Phys 106 2936-2948
[6]  
Dobson C.M.(1984)The Effect of Density on the Inherent Structures in Liquids J. Chem. Phys. 80 2742-2746
[7]  
Karplus M.(1988)Supercooled Liquid, Class Transitions and the Kauzmann Paradox. J. Chem. Phys. 88 7818-7825
[8]  
Chan H.S.(1935)Statistical Mechanics of Fluid Mixtures J. Chem. Phys. 3 300-313
[9]  
Dill K.A.(1996)Solvent-Induced Forces on a Molecular Scale: Non-Additivity, Modulation and Causal Relation to Hydration Chem. Phys. Lett. 254 283-291
[10]  
Onuchic J.N.(1998)Physics and Biophysics of Solvent Induced Forces: Hydrophobic Interactions and Context-Dependent Hydration Eur. Biophys. J. 27 183-196