Improving microRNA target prediction with gene expression profiles

被引:0
作者
Cesaré Ovando-Vázquez
Daniel Lepe-Soltero
Cei Abreu-Goodger
机构
[1] Unidad de Genómica Avanzada (Langebio),
[2] Centro de Investigación y de Estudios Avanzados del IPN,undefined
来源
BMC Genomics | / 17卷
关键词
microRNA target prediction; Support Vector Machine; Gene expression profiles; Biological context; microRNA perturbation experiments;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 401 条
[1]  
Bartel DP(2009)MicroRNAs: target recognition and regulatory functions Cell 136 215-33
[2]  
Bazzini AA(2012)Ribosome Profiling Shows That miR-430 Reduces Translation Before Causing mRNA Decay in Zebrafish Science 336 233-237
[3]  
Lee MT(2014)miRBase: Annotating high confidence microRNAs using deep sequencing data Nucleic Acids Res 42 68-73
[4]  
Giraldez AJ(2009)Most mammalian mRNAs are conserved targets of microRNAs Genome Res 19 92-105
[5]  
Kozomara A(2005)Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell 120 15-20
[6]  
Griffiths-Jones S(2005)Combinatorial microRNA target predictions Nat Genet 37 495-500
[7]  
Friedman RC(2003)MicroRNA targets in Drosophila Genome Biol 5 R1-105
[8]  
Farh KK-H(2007)MicroRNA targeting specificity in mammals: determinants beyond seed pairing Mol Cell 27 91-46
[9]  
Burge CB(2011)Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs Nat Struct Mol Biol 18 1139-6
[10]  
Bartel DP(2012)Functional microRNA targets in protein coding sequences Bioinformatics 28 771-255