iREAD: a tool for intron retention detection from RNA-seq data

被引：0
|
作者：
Hong-Dong Li
Cory C. Funk
Nathan D. Price
机构：
[1] School of Computer Science and Engineering,Center for Bioinformatics
[2] Central South University,undefined
[3] Institute for Systems Biology,undefined
来源：
BMC Genomics | / 21卷
关键词：
Intron retention; RNA-seq; iREAD; Gene expression;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length
    Shao-Ke Lou
    Jing-Woei Li
    Hao Qin
    Aldrin Kay-Yuen Yim
    Leung-Yau Lo
    Bing Ni
    Kwong-Sak Leung
    Stephen Kwok-Wing Tsui
    Ting-Fung Chan
    BMC Bioinformatics, 12
  • [32] SplicingCompass: differential splicing detection using RNA-Seq data
    Aschoff, Moritz
    Hotz-Wagenblatt, Agnes
    Glatting, Karl-Heinz
    Fischer, Matthias
    Eils, Roland
    Koenig, Rainer
    BIOINFORMATICS, 2013, 29 (09) : 1141 - 1148
  • [33] Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq
    Hartley, Stephen W.
    Mullikin, James C.
    NUCLEIC ACIDS RESEARCH, 2016, 44 (15) : e127
  • [34] Computational analysis of alternative polyadenylation from standard RNA-seq and single-cell RNA-seq data
    Gao, Yipeng
    Li, Wei
    MRNA 3' END PROCESSING AND METABOLISM, 2021, 655 : 225 - 243
  • [35] Disease Biomarker Query from RNA-Seq Data
    Han, Henry
    Jiang, Xiaoqian
    CANCER INFORMATICS, 2014, 13 : 81 - 94
  • [36] PingPongPro: a tool for the detection of piRNA-mediated transposon-silencing in small RNA-Seq data
    Uhrig, Sebastian
    Klein, Holger
    BIOINFORMATICS, 2019, 35 (02) : 335 - 336
  • [37] Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
    Thorne, Thomas
    STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY, 2015, 14 (06) : 575 - 583
  • [38] Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data
    Ao Zhou
    Marcus R Breese
    Yangyang Hao
    Howard J Edenberg
    Lang Li
    Todd C Skaar
    Yunlong Liu
    BMC Genomics, 13
  • [39] FusionFinder: A Software Tool to Identify Expressed Gene Fusion Candidates from RNA-Seq Data
    Francis, Richard W.
    Thompson-Wicking, Katherine
    Carter, Kim W.
    Anderson, Denise
    Kees, Ursula R.
    Beesley, Alex H.
    PLOS ONE, 2012, 7 (06):
  • [40] Detection of splice junctions from paired-end RNA-seq data by SpliceMap
    Au, Kin Fai
    Jiang, Hui
    Lin, Lan
    Xing, Yi
    Wong, Wing Hung
    NUCLEIC ACIDS RESEARCH, 2010, 38 (14) : 4570 - 4578
12345