STAR NET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data

Barrett T(2007)NCBI GEO: mining tens of millions of expression profiles--database and tools update Nucleic Acids Res 35 D760-D765

Troup DB(2002)Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucleic Acids Res 30 207-210

Wilhite SE(2008)A visual data mining tool that facilitates reconstruction of transcription regulatory networks PLoS One 3 e1717-14868

Ledoux P(1998)Cluster analysis and display of genome-wide expression patterns Proc Natl Acad Sci USA 95 14863-901

Rudnev D(2009)Assessing statistical significance in microarray experiments using the distance between microarrays PLoS One 4 e5838-104

Evangelista C(2009)Methods for interpreting lists of affected genes obtained in a DNA microarray experiment BMC Proc 3 S5-2429

Kim IF(2009)Implementation of GenePattern within the Stanford Microarray Database Nucleic Acids Res 37 D898-6

Soboleva A(2009)Microarray data analysis for differential expression: a tutorial P R Health Sci J 28 89-255

Tomashevsky M(2009)WebArrayDB: Cross-platform microarray data analysis and public data repository Bioinformatics 25 2425-D31

Edgar R(2009)Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis BMC Bioinformatics 10 200-264

Barrett T(2007)NCBI GEO: mining tens of millions of expression profiles--database and tools update Nucleic Acids Res 35 D760-D765

Troup DB(2002)Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucleic Acids Res 30 207-210

Wilhite SE(2008)A visual data mining tool that facilitates reconstruction of transcription regulatory networks PLoS One 3 e1717-14868

Ledoux P(1998)Cluster analysis and display of genome-wide expression patterns Proc Natl Acad Sci USA 95 14863-901

Rudnev D(2009)Assessing statistical significance in microarray experiments using the distance between microarrays PLoS One 4 e5838-104

Evangelista C(2009)Methods for interpreting lists of affected genes obtained in a DNA microarray experiment BMC Proc 3 S5-2429

Kim IF(2009)Implementation of GenePattern within the Stanford Microarray Database Nucleic Acids Res 37 D898-6

Soboleva A(2009)Microarray data analysis for differential expression: a tutorial P R Health Sci J 28 89-255

Tomashevsky M(2009)WebArrayDB: Cross-platform microarray data analysis and public data repository Bioinformatics 25 2425-D31

Edgar R(2009)Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis BMC Bioinformatics 10 200-264