Network analysis of microRNAs, transcription factors, and target genes involved in axon regeneration神经轴突再生过程中微小 RNA (miRNA)、 转录因子和靶基因的网络功能分析

被引:0
作者
Li-ning Su
Xiao-qing Song
Zhan-xia Xue
Chen-qing Zheng
Hai-feng Yin
Hui-ping Wei
机构
[1] Hebei North University,Department of Basic Medicine
[2] Hebei North University,Department of Pharmacy
[3] Shenzhen RealOmics (Biotech) Co.,undefined
[4] Ltd.,undefined
来源
Journal of Zhejiang University-SCIENCE B | 2018年 / 19卷
关键词
Transcription factors; miRNAs; Target genes; Axon; Network analysis; R49; 转录因子; miRNA; 靶基因; 神经轴突; 网络分析;
D O I
暂无
中图分类号
学科分类号
摘要
Axon regeneration is crucial for recovery from neurological diseases. Numerous studies have identified several genes, microRNAs (miRNAs), and transcription factors (TFs) that influence axon regeneration. However, the regulatory networks involved have not been fully elucidated. In the present study, we analyzed a regulatory network of 51 miRNAs, 27 TFs, and 59 target genes, which is involved in axon regeneration. We identified 359 pairs of feedforward loops (FFLs), seven important genes (Nap1l1, Arhgef12, Sema6d, Akt3, Trim2, Rab11fip2, and Rps6ka3), six important miRNAs (hsa-miR-204-5p, hsa-miR-124-3p, hsa-miR-26a-5p, hsa-miR-16-5p, hsa-miR-17-5p, and hsamiR-15b-5p), and eight important TFs (Smada2, Fli1, Wt1, Sp6, Sp3, Smad4, Smad5, and Creb1), which appear to play an important role in axon regeneration. Functional enrichment analysis revealed that axon-associated genes are involved mainly in the regulation of cellular component organization, axonogenesis, and cell morphogenesis during neuronal differentiation. However, these findings need to be validated by further studies.
引用
收藏
页码:293 / 304
页数:11
相关论文
共 90 条
  • [1] Baldwin KT(2015)Insights into the physiological role of CNS regeneration inhibitors Front Mol Neurosci 8 23-2377
  • [2] Giger RJ(2015)Investigating DNA methylation dynamics and safety of human embryonic stem cell differentiation towards striatal neurons Stem Cells Dev 24 2366-436
  • [3] Baronchelli S L(2010)Xanthomonas AvrBs3 family-type III effectors: discovery and function Ann Rev Phytopathol 48 419-78
  • [4] Spada A(2004)Plasmid-based short-hairpin RNA interference in the chicken embryo Genesis 39 73-815
  • [5] Conforti P(2016)Inhibiting Smad2/3 signaling in pluripotent mouse embryonic stem cells enhances endoderm formation by increasing transcriptional priming of lineage-specifying target genes Dev Dyn 245 807-602
  • [6] Boch J(2011)Axon physiology Physiol Rev 91 555-1441
  • [7] Bonas U(2005)Voltage-clamp predictions by gompertz kinetics model relating squid-axon Na+-gating and ionic currents Int J Neurosci 115 1415-275
  • [8] Chesnutt C(1994)Integrated control of cell proliferation and cell death by the c-myc oncogene Philos Trans R Soc Lond B Biol Sci 345 269-12
  • [9] Niswander L(2011)Extrinsic and intrinsic determinants of nerve regeneration J Tissue Eng 2 1-184
  • [10] Dahle O(2013)Fluoxetine modulates hippocampal cell signaling pathways implicated in neuroplasticity in olfactory bulbectomized mice Behav Brain Res 237 176-38