A transversal approach to predict gene product networks from ontology-based similarity

[1] Consortium GO(2006)The Gene Ontology (GO) project in 2006 Nucleic Acids Res 34 D322-326

[2] Eisen MB(1998)Cluster analysis and display of genome-wide expression patterns Proc Natl Acad Sci U S A 95 14863-14868

[3] Spellman PT(2006)GOFFA: Gene Ontology For Functional Analysis - A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data BMC Bioinformatics 7 Suppl 2 S23-3595

[4] Brown PO(2005)Ontological analysis of gene expression data: current tools, limitations, and open problems Bioinformatics 21 3587-1581

[5] Botstein D(2002)Judging the quality of gene expression-based clustering methods using gene annotation Genome Res 12 1574-1256

[6] Sun H(2005)ISYMOD: a knowledge warehouse for the identification, assembly and analysis of bacterial integrated systems Bioinformatics 21 1246-457

[7] Fang H(2002)Strategies for the identification, the assembly and the classification of integrated biological systems in completely sequenced genomes Comput Chem 26 447-513

[8] Chen T(2002)Regulatory relationship of two-component and ABC transport systems and clustering of their genes in the Bacillus/Clostridium group, suggest a functional link between them J Mol Microbiol Biotechnol 4 503-310

[9] Perkins R(1989)Ranking documents with a thesaurus J Am Soc Inf Sci 40 304-1283

[10] Tong W(2003)Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation Bioinformatics 19 1275-789

[1] Consortium GO(2006)The Gene Ontology (GO) project in 2006 Nucleic Acids Res 34 D322-326

[2] Eisen MB(1998)Cluster analysis and display of genome-wide expression patterns Proc Natl Acad Sci U S A 95 14863-14868

[3] Spellman PT(2006)GOFFA: Gene Ontology For Functional Analysis - A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data BMC Bioinformatics 7 Suppl 2 S23-3595

[4] Brown PO(2005)Ontological analysis of gene expression data: current tools, limitations, and open problems Bioinformatics 21 3587-1581

[5] Botstein D(2002)Judging the quality of gene expression-based clustering methods using gene annotation Genome Res 12 1574-1256

[6] Sun H(2005)ISYMOD: a knowledge warehouse for the identification, assembly and analysis of bacterial integrated systems Bioinformatics 21 1246-457

[7] Fang H(2002)Strategies for the identification, the assembly and the classification of integrated biological systems in completely sequenced genomes Comput Chem 26 447-513

[8] Chen T(2002)Regulatory relationship of two-component and ABC transport systems and clustering of their genes in the Bacillus/Clostridium group, suggest a functional link between them J Mol Microbiol Biotechnol 4 503-310

[9] Perkins R(1989)Ranking documents with a thesaurus J Am Soc Inf Sci 40 304-1283

[10] Tong W(2003)Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation Bioinformatics 19 1275-789