Isolation and characterization of fourteen microsatellite loci from the endangered octocoral Eunicella verrucosa (Pallas 1766)

被引:0
|
作者
Lyndsey P. Holland
Deborah A. Dawson
Gavin J. Horsburgh
Andrew P. Krupa
Jamie R. Stevens
机构
[1] University of Exeter,Department of Biosciences, College of Life and Environmental Sciences
[2] University of Sheffield,NERC Biomolecular Analysis Facility, Department of Animal and Plant Sciences
来源
Conservation Genetics Resources | 2013年 / 5卷
关键词
Gorgoniidae; IUCN red list; Microsatellite; Octocoral; Pink sea fan; Simple tandem repeat (STR);
D O I
暂无
中图分类号
学科分类号
摘要
We isolated 165 unique microsatellite sequences from the threatened and IUCN red-listed octocoral Eunicella verrucosa (common name: pink sea fan). Two enriched genomic libraries were created from a single individual collected in Lyme Bay, Dorset, England. Following testing of 76 markers, 14 loci were then selected, multiplexed and characterised in 44 individuals sampled at the Mewstone Ledges, Plymouth Sound, Devon, England. The number of alleles per locus ranged from 2 to 10 and expected heterozygosities from 0.05 to 0.82. The presence of null alleles was suggested for four loci, with three showing significant deviations from Hardy–Weinberg equilibrium. No linkage disequilibrium was detected. Cross-species utility was assessed in Eunicella singularis (n = 20), E. cavolinii (n = 12) and Leptogorgia sarmentosa (n = 3) collected from the Mediterranean and southern Portugal. At least ten loci were polymorphic in each Eunicella species and five in L. sarmentosa. These markers should prove useful in exploring population structure in these as yet poorly studied animals.
引用
收藏
页码:825 / 829
页数:4
相关论文
共 50 条
  • [21] Isolation and characterization of 18 microsatellite loci for an endangered fresh water crocodile Tomistoma schlegelii
    Chang, Yi-Chun
    Li, Shou-Hsien
    Chang, Ming-Hsung
    Chen, Szu-Lung
    CONSERVATION GENETICS RESOURCES, 2014, 6 (02) : 495 - 498
  • [22] Isolation and characterization of 18 microsatellite loci for an endangered fresh water crocodile Tomistoma schlegelii
    Yi-Chun Chang
    Shou-Hsien Li
    Ming-Hsung Chang
    Szu-Lung Chen
    Conservation Genetics Resources, 2014, 6 : 495 - 498
  • [23] Isolation of microsatellite loci from endangered members of Lotus (Fabaceae) subgenus Syrmatium
    McGlaughlin, Mitchell E.
    Riley, Lynn
    Wallace, Lisa E.
    Helenurm, Kaius
    CONSERVATION GENETICS RESOURCES, 2011, 3 (01) : 117 - 121
  • [24] Isolation and characterization of microsatellite loci in Senecio
    Liu, GQ
    Hegarty, MJ
    Edwards, KJ
    Hiscock, SJ
    Abbott, RJ
    MOLECULAR ECOLOGY NOTES, 2004, 4 (04): : 611 - 614
  • [25] Isolation of microsatellite loci from endangered members of Lotus (Fabaceae) subgenus Syrmatium
    Mitchell E. McGlaughlin
    Lynn Riley
    Lisa E. Wallace
    Kaius Helenurm
    Conservation Genetics Resources, 2011, 3 : 117 - 121
  • [26] Isolation and characterization of microsatellite loci in the endangered Amur ratsnake Elaphe schrenckii (Reptilia; Squamata; Colubridae) from China
    Xue-yang Xu
    Tian-long Fu
    Yan-Fu Qu
    Xiao-xiao Zheng
    Chao-nan Zhu
    Shan Sun
    Hong Li
    Conservation Genetics Resources, 2014, 6 : 645 - 646
  • [27] Isolation and characterization of microsatellite loci in the endangered Amur ratsnake Elaphe schrenckii (Reptilia; Squamata; Colubridae) from China
    Xu, Xue-yang
    Fu, Tian-long
    Qu, Yan-fu
    Zheng, Xiao-xiao
    Zhu, Chao-nan
    Sun, Shan
    Li, Hong
    CONSERVATION GENETICS RESOURCES, 2014, 6 (03) : 645 - 646
  • [28] Isolation and characterization of microsatellite loci in an endangered tree species, Afzelia xylocarpa (Kurz) Craib (Caesalpinioideae)
    Pakkad, Greuk
    Ueno, Saneyoshi
    Yoshimaru, Hiroshi
    MOLECULAR ECOLOGY RESOURCES, 2009, 9 (03) : 880 - 882
  • [29] Isolation and characterization of microsatellite loci from the tapeworm Schistocephalus solidus
    Binz, T
    Reusch, TBH
    Wedekind, C
    Schärer, L
    Sternberg, JM
    Milinski, M
    MOLECULAR ECOLOGY, 2000, 9 (11) : 1926 - 1927
  • [30] Isolation and characterization of microsatellite loci from Pinus massoniana (Pinaceae)
    Hung, Kuo-Hsiang
    Lin, Chi-Yung
    Huang, Chi-Chun
    Hwang, Chi-Chuan
    Hsu, Tsai-Wen
    Kuo, Yau-Lun
    Wang, Wei-Kuang
    Hung, Cheng-Yu
    Chiang, Tzen-Yuh
    BOTANICAL STUDIES, 2012, 53 (02) : 191 - 196