Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture

被引：0

作者：

Daniel J. Macqueen

Craig R. Primmer

Ross D. Houston

Barbara F. Nowak

Louis Bernatchez

Steinar Bergseth

William S. Davidson

Cristian Gallardo-Escárate

Tom Goldammer

Yann Guiguen

Patricia Iturra

James W. Kijas

Ben F. Koop

Sigbjørn Lien

Alejandro Maass

Samuel A. M. Martin

Philip McGinnity

Martin Montecino

Kerry A. Naish

Krista M. Nichols

Kristinn Ólafsson

Stig W. Omholt

Yniv Palti

Graham S. Plastow

Caird E. Rexroad

Matthew L. Rise

Rachael J. Ritchie

Simen R. Sandve

Patricia M. Schulte

Alfredo Tello

Rodrigo Vidal

Jon Olav Vik

Anna Wargelius

José Manuel Yáñez

机构：

[1] University of Aberdeen,Institute of Biological and Environmental Sciences

[2] University of Turku,Department of Biology

[3] The University of Edinburgh,The Roslin Institute and Royal (Dick) School of Veterinary Studies

[4] University of Tasmania,Institute for Marine and Antarctic Studies

[5] Université Laval,Département de biologie, Institut de Biologie Intégrative et des Systèmes (IBIS)

[6] The Research Council of Norway,Department of Molecular Biology and Biochemistry

[7] Simon Fraser University,Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research, Department of Oceanography

[8] Universidad de Concepción,Human Genetics Program ICBM Faculty of Medicine

[9] Leibniz Institute for Farm Animal Biology,Department of Biology

[10] Institute for Genome Biology,Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences

[11] Fish Genetics Unit,Center for Mathematical Modelling, Department of Mathematical Engineering

[12] INRA,Center for Genome Regulation

[13] UR1037 Fish Physiology and Genomics,School of Biological, Earth and Environmental Sciences

[14] University of Chile,Center for Biomedical Research

[15] CSIRO Agriculture,FONDAP Center for Genome Regulation, Faculty of Biological Sciences and Faculty of Medicine

[16] University of Victoria,School of Aquatic and Fishery Sciences

[17] Norwegian University of Life Sciences,National Center for Cool and Cold Water Aquaculture

[18] University of Chile,Department of Agricultural, Food, and Nutritional Science

[19] University of Chile,Office of National Programs

[20] University College Cork,Department of Ocean Sciences

[21] Universidad Andres Bello,Department of Zoology

[22] Universidad Andres Bello,Instituto Tecnológico del Salmón S.A.

[23] University of Washington,Laboratory of Molecular Ecology, Genomics, and Evolutionary Studies, Department of Biology

[24] Conservation Biology Division,Faculty of Veterinary and Animal Sciences

[25] Northwest Fisheries Science Center,undefined

[26] National Marine Fisheries Service,undefined

[27] National Oceanic and Atmospheric Administration,undefined

[28] Matis Ltd,undefined

[29] NTNU - Norwegian University of Science and Technology,undefined

[30] USDA ARS,undefined

[31] University of Alberta,undefined

[32] USDA ARS,undefined

[33] Memorial University of Newfoundland,undefined

[34] Genome British Columbia,undefined

[35] University of British Columbia,undefined

[36] INTESAL de SalmonChile,undefined

[37] University of Santiago,undefined

[38] Institute of Marine Research,undefined

[39] University of Chile,undefined

来源：

BMC Genomics | / 18卷

关键词：

Salmonid fish; Genome biology; Functional annotation; Comparative biology; Standardized data and metadata; Data sharing; Aquaculture; Whole genome duplication; Evolution; Phenotyping;

D O I：

暂无

中图分类号：

学科分类号：

摘要：

We describe an emerging initiative - the ‘Functional Annotation of All Salmonid Genomes’ (FAASG), which will leverage the extensive trait diversity that has evolved since a whole genome duplication event in the salmonid ancestor, to develop an integrative understanding of the functional genomic basis of phenotypic variation. The outcomes of FAASG will have diverse applications, ranging from improved understanding of genome evolution, to improving the efficiency and sustainability of aquaculture production, supporting the future of fundamental and applied research in an iconic fish lineage of major societal importance.

引用

共 343 条

[1]

Davidson WS(2010)Sequencing the genome of the Atlantic salmon ( Genome Biol 11 403-37

[2]

Koop BF(2003)) Front Ecol Environ 1 31-188

[3]

Jones SJ(2008)Pacific salmon and the ecology of coastal ecosystems Evol Appl 1 183-1800

[4]

Iturra P(2010)Special Issue: Evolutionary perspectives on salmonid conservation and management Philos Trans R Soc Lond Ser B Biol Sci 365 1783-205

[5]

Vidal R(2014)On the origin of species: Insights from the ecological genomics of whitefish Proc Biol Sci 281 20132881-672

[6]

Maass A(2016)A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification Nature 533 200-1011

[7]

Jonassen I(2014)The Atlantic salmon genome provides insights into rediploidization Nat Commun 5 3657-408

[8]

Lien S(2015)The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates Genome Biol 16 57-2485

[9]

Omholt SW(2014)Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project PLoS One 9 e102089-5595

[10]

Schindler DE(2014)The genome and linkage map of the northern pike ( BMC Genomics 15 90-2746

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