Computationally identifying hot spots in protein-DNA binding interfaces using an ensemble approach

被引:0
作者
Yuliang Pan
Shuigeng Zhou
Jihong Guan
机构
[1] Department of Computer Science and Technology,
[2] Tongji University,undefined
[3] Shanghai Key Laboratory of Intelligent Information Processing,undefined
[4] and School of Computer Science,undefined
[5] Fudan University,undefined
来源
BMC Bioinformatics | / 21卷
关键词
Protein-DNA complexes; Hot spots; Ensemble stacking classifier; Feature selection;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 166 条
  • [31] Wang W(1983)Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features Biopolymers Orig Res Biomol 22 2577-9
  • [32] Pires DE(2019)Netsurfp-2.0: Improved prediction of protein structural features by integrated deep learning Proteins Struct Funct Bioinforma 87 520-91
  • [33] Ascher DB(2017)Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact numbers and solvent accessibility Bioinformatics 33 2842-692
  • [34] Zhang S(2012)Structural features that predict real-value fluctuations of globular proteins Proteins Struct Funct Bioinforma 80 1425-5
  • [35] Zhao L(2007)Predicting functionally important residues from sequence conservation Bioinformatics 23 1875-32
  • [36] Zheng C-H(2000)AAindex: amino acid index database Nucleic Acids Res 28 374-422
  • [37] Xia J(1992)Amino acid substitution matrices from protein blocks Proc Natl Acad Sci 89 10915-48
  • [38] Kumar MS(2004)Relationship between local structural entropy and protein thermostabilty Proteins Struct Funct Bioinforma 57 684-undefined
  • [39] Bava KA(2016)Improving protein disorder prediction by deep bidirectional long short-term memory recurrent neural networks Bioinformatics 33 685-undefined
  • [40] Gromiha MM(2016)Raptorx-property: a web server for protein structure property prediction Nucleic Acids Res 44 430-undefined