QSAR and pharmacophore approach on substituted imidazole derivatives as angiotensin II receptor antagonists

被引:0
作者
Mukesh C. Sharma
Smita Sharma
Pratibha Sharma
Ashok Kumar
Kamlendra Singh Bhadoriya
机构
[1] Devi Ahilya University,School of Pharmacy
[2] Chodhary Dilip Singh Kanya Mahavidyalya,Department of Chemistry
[3] Devi Ahilya University,School of Chemical Sciences
[4] ShriRam College of Pharmacy (SRCP),undefined
来源
Medicinal Chemistry Research | 2014年 / 23卷
关键词
QSAR; Group-based QSAR; -Nearest neighbor; Pharmacophore; Imidazoles; AT; receptor; Hypertension;
D O I
暂无
中图分类号
学科分类号
摘要
A QSAR analyses of 32 aminomethyl and acylaminomethyl substituents derivatives were carried out to interpret the relationship between structural properties and angiotensin II AT1 receptor activity. Two-dimensional (2D-QSAR), Group-based (G-QSAR), 3D-QSAR, and pharmacophore mapping studies were performed using partial least square and k-nearest neighbor methodology coupled with various feature selection methods, viz. stepwise, genetic algorithm, and simulated annealing (SA) to derive QSAR models which were further validated for statistical significance and predictive ability by internal and external validation. The activity contributions of whole compounds and their substituents were determined from regression equation. The statistically significant best 2D-QSAR model 1 having r2 = 0.8754 and q2 = 0.7231 with pred_r2=0.8389\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ {\text{pred}}\_r^{ 2} = \, 0. 8 3 8 9 $$\end{document} was developed by GA-PLS with the descriptors like SdssCcount, SssNHcount and SaaaCcount. The best Group-based QSAR model-5 having r2 = 0.7516 and q2 = 0.6714 with pred_r2=0.7309\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ {\text{pred}}\_r^{ 2} = \, 0. 7 3 0 9 $$\end{document} was developed by GA-PLS. The 2D-QSAR results agreed with those from the Group based QSAR model and suggested the structural features of SssOE-index, Mol.Wt and SssNHE-index functionality that would enhance the antihypertensive activity of the imidazole derivatives in this series. The results of two-dimensional, Group-based QSAR showed that a combination of topological indices, hydrophobic properties, and auto-correlation descriptors of different atomic properties could be explored to design potent antihypertensive agents. The k-nearest neighbor approach was used to generate three-dimensional quantitative structure–activity relationship (3D-QSAR) models for these sets of molecules. The present study is an attempt in this direction seeking for the development and comparison of QSAR models of substituted imidazoles by different feature selection methods, which ultimately establishes the superiority of the GA-based models. Statistically genetic algorithm (GA) selection k-nearest neighbor (GA-kNN-MFA) model with respect to both the internal (q2 = 0.7856) as well as external (pred_r2 = 0.8193) model validation and correctly predicts the activity of calculated 78.56 % and calculated 81.93 % for the training and test set, respectively. Continuing with the series of substituted imidazoles derivatives, chemical feature-based pharmacophore models with lowest RMSD value (0.1397 Å), consisting of one aromatic carbon center, two hydrogen bond acceptor, and one hydrogen bond donor features, was developed. The information rendered by 2D-QSAR, Group-based QSAR, k-nearest neighbor, and pharmacophore identification models may lead to a better understanding of structural requirements of antihypertensive agents and can help in the design of novel potent molecules.
引用
收藏
页码:660 / 681
页数:21
相关论文
共 194 条
  • [1] Ajmani S(2006)Three-dimensional QSAR using the k-nearest neighbor method and its interpretation J Chem Inf Model 46 24-31
  • [2] Jadhav K(2009)Group-based QSAR (GQSAR): mitigating interpretation challenges in QSAR QSAR Comb Sci 28 36-41
  • [3] Kulkarni SA(2010)A comprehensive structure–activity analysis of protein kinase B-alpha (Akt1) inhibitors J Mol Graph Model 28 683-694
  • [4] Ajmani S(2002)An alignment-independent versatile structure descriptor for QSAR and QSPR based on the distribution of molecular features J Chem Inf Comput Sci 42 26-35
  • [5] Jadhav K(2012)QSAR studies of fused 5,6-bicyclic heterocycles as c-secretase modulators J Pharm Res 5 4127-4132
  • [6] Kulkarni SA(1989)Validation of the general purpose Tripose 5.2 force field J Comput Chem 10 982-1012
  • [7] Ajmani S(1988)Comparative molecular field analysis (CoMFA) 1. Effect of shape on binding of steroids to carrier proteins J Am Chem Soc 110 5959-5967
  • [8] Agrawal A(2000)International union of pharmacology. XXIII. The angiotensin II receptors Pharmacol Rev 52 415-472
  • [9] Kulkarni SA(2009)3DQSAR studies, biological evaluation studies on some substituted 3-chloro-1-[5-(5-chloro-2-phenyl-benzimidazole-1-ylmethyl)-[1,3,4]thiadiazole-2-yl]-azetidin-2-one as potential antimicrobial activity Dig J Nanomater Biostruct 4 275-279
  • [10] Baumann K(2002)Multiple angiotensin receptors subtype in normal and tumour astrocyte in vitro Glia 39 304-314