Oncogenic Ras influences the expression of multiple lncRNAs

被引:13
作者
Kotake, Yojiro [1 ]
Naemura, Madoka [1 ]
Kitagawa, Kyoko [2 ]
Niida, Hiroyuki [2 ]
Tsunoda, Toshiyuki [3 ]
Shirasawa, Senji [3 ]
Kitagawa, Masatoshi [2 ]
机构
[1] Kinki Univ, Fac Humanity Oriented Sci & Engn, Dept Biol & Environm Chem, 11-6 Kayanomori, Iizuka, Fukuoka 8208555, Japan
[2] Hamamatsu Univ Sch Med, Dept Mol Biol, Higashi Ku, 1-20-1 Handayama, Hamamatsu, Shizuoka 4313192, Japan
[3] Fukuoka Univ, Dept Cell Biol, Fac Med, Jonan Ku, 7-45-1 Nanakuma, Fukuoka 8140180, Japan
关键词
Long non-coding RNA; Oncogenic Ras; ANRIL; PANDA; LONG NONCODING RNAS; TUMOR-SUPPRESSOR; CANCER; ANRIL; P16(INK4A); SENESCENCE; REPRESSION; GENE; P53;
D O I
10.1007/s10616-014-9834-9
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Recent ultrahigh-density tiling array and large-scale transcriptome analysis have revealed that large numbers of long non-coding RNAs (lncRNAs) are transcribed in mammals. Several lncRNAs have been implicated in transcriptional regulation, organization of nuclear structure, and post-transcriptional processing. However, the regulation of expression of lncRNAs is less well understood. Here, we show that the exogenous and endogenous expression of an oncogenic form of small GTPase Ras (called oncogenic Ras) decrease the expression of lncRNA ANRIL (antisense non-coding RNA in the INK4 locus), which is involved in the regulation of cellular senescence. We also show that forced expression of oncogenic Ras increases the expression of lncRNA PANDA (p21 associated ncRNA DNA damage activated), which is involved in the regulation of apoptosis. Microarray analysis demonstrated that expression of multiple lncRNAs fluctuated by forced expression of oncogenic Ras. These findings indicate that oncogenic Ras regulates the expression of a large number of lncRNAs including functional lncRNAs, such as ANRIL and PANDA.
引用
收藏
页码:1591 / 1596
页数:6
相关论文
共 23 条
[1]   Long Noncoding RNAs: Cellular Address Codes in Development and Disease [J].
Batista, Pedro J. ;
Chang, Howard Y. .
CELL, 2013, 152 (06) :1298-1307
[2]   INK4a-deficient human diploid fibroblasts are resistant to RAS-induced senescence [J].
Brookes, S ;
Rowe, J ;
Ruas, M ;
Llanos, S ;
Clark, PA ;
Lomax, M ;
James, MC ;
Vatcheva, R ;
Bates, S ;
Vousden, KH ;
Parry, D ;
Gruis, N ;
Smit, N ;
Bergman, W ;
Peters, G .
EMBO JOURNAL, 2002, 21 (12) :2936-2945
[3]   The transcriptional landscape of the mammalian genome [J].
Carninci, P ;
Kasukawa, T ;
Katayama, S ;
Gough, J ;
Frith, MC ;
Maeda, N ;
Oyama, R ;
Ravasi, T ;
Lenhard, B ;
Wells, C ;
Kodzius, R ;
Shimokawa, K ;
Bajic, VB ;
Brenner, SE ;
Batalov, S ;
Forrest, ARR ;
Zavolan, M ;
Davis, MJ ;
Wilming, LG ;
Aidinis, V ;
Allen, JE ;
Ambesi-Impiombato, X ;
Apweiler, R ;
Aturaliya, RN ;
Bailey, TL ;
Bansal, M ;
Baxter, L ;
Beisel, KW ;
Bersano, T ;
Bono, H ;
Chalk, AM ;
Chiu, KP ;
Choudhary, V ;
Christoffels, A ;
Clutterbuck, DR ;
Crowe, ML ;
Dalla, E ;
Dalrymple, BP ;
de Bono, B ;
Della Gatta, G ;
di Bernardo, D ;
Down, T ;
Engstrom, P ;
Fagiolini, M ;
Faulkner, G ;
Fletcher, CF ;
Fukushima, T ;
Furuno, M ;
Futaki, S ;
Gariboldi, M .
SCIENCE, 2005, 309 (5740) :1559-1563
[4]   Ras signalling and apoptosis [J].
Downward, J .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 1998, 8 (01) :49-54
[5]   Long non-coding RNAs: new players in cell differentiation and development [J].
Fatica, Alessandro ;
Bozzoni, Irene .
NATURE REVIEWS GENETICS, 2014, 15 (01) :7-21
[6]   Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis [J].
Gupta, Rajnish A. ;
Shah, Nilay ;
Wang, Kevin C. ;
Kim, Jeewon ;
Horlings, Hugo M. ;
Wong, David J. ;
Tsai, Miao-Chih ;
Hung, Tiffany ;
Argani, Pedram ;
Rinn, John L. ;
Wang, Yulei ;
Brzoska, Pius ;
Kong, Benjamin ;
Li, Rui ;
West, Robert B. ;
van de Vijver, Marc J. ;
Sukumar, Saraswati ;
Chang, Howard Y. .
NATURE, 2010, 464 (7291) :1071-U148
[7]   A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response [J].
Huarte, Maite ;
Guttman, Mitchell ;
Feldser, David ;
Garber, Manuel ;
Koziol, Magdalena J. ;
Kenzelmann-Broz, Daniela ;
Khalil, Ahmad M. ;
Zuk, Or ;
Amit, Ido ;
Rabani, Michal ;
Attardi, Laura D. ;
Regev, Aviv ;
Lander, Eric S. ;
Jacks, Tyler ;
Rinn, John L. .
CELL, 2010, 142 (03) :409-419
[8]   Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters [J].
Hung, Tiffany ;
Wang, Yulei ;
Lin, Michael F. ;
Koegel, Ashley K. ;
Kotake, Yojiro ;
Grant, Gavin D. ;
Horlings, Hugo M. ;
Shah, Nilay ;
Umbricht, Christopher ;
Wang, Pei ;
Wang, Yu ;
Kong, Benjamin ;
Langerod, Anita ;
Borresen-Dale, Anne-Lise ;
Kim, Seung K. ;
van de Vijver, Marc ;
Sukumar, Saraswati ;
Whitfield, Michael L. ;
Kellis, Manolis ;
Xiong, Yue ;
Wong, David J. ;
Chang, Howard Y. .
NATURE GENETICS, 2011, 43 (07) :621-U196
[9]   Ras oncogenes: split personalities [J].
Karnoub, Antoine E. ;
Weinberg, Robert A. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2008, 9 (07) :517-531
[10]   Cell cycle regulation by long non-coding RNAs [J].
Kitagawa, Masatoshi ;
Kitagawa, Kyoko ;
Kotake, Yojiro ;
Niida, Hiroyuki ;
Ohhata, Tatsuya .
CELLULAR AND MOLECULAR LIFE SCIENCES, 2013, 70 (24) :4785-4794