Quantitative Analysis of Intermolecular Interactions in 7-Hydroxy-4-methyl-2H-chromen-2-one and Its Hydrate

被引:0
作者
Piyush Panini
K. N. Venugopala
B. Odhav
Deepak Chopra
机构
[1] Indian Institute of Science Education and Research Bhopal,Department of Chemistry
[2] Durban University of Technology,Department of Biotechnology and Food Technology
来源
Proceedings of the National Academy of Sciences, India Section A: Physical Sciences | 2014年 / 84卷
关键词
Coumarin; Hirshfeld; PIXEL; Molecular pairs; Intermolecular interactions;
D O I
暂无
中图分类号
学科分类号
摘要
The determination of the crystal and molecular structure of organic compounds has contributed immensely towards the area of crystal engineering. This contributes towards the understanding of the molecular geometry and the different intermolecular interactions which control crystal packing. An approach which quantifies the energetics associated with the formation of different “molecular pairs” is of importance to recognize the hierarchy of intermolecular interactions present in the crystal. We intend to explore different computational tools which contribute towards the field of crystal engineering. In this regard, the crystal structure of 7-hydroxy-4-methyl-2H-chromen-2-one and its hydrate were re-determined and their crystal packing were analyzed in terms of the interaction energy of different intermolecular interactions, calculated by PIXEL method, contributing towards the stabilization of the crystal packing. The system is so chosen such that it allows the analysis of weak interactions like C–H···O, C–H···π, π···π, lp···π etc. in the presence of strong O–H···O hydrogen bonds and also allows for a systematic exploration of the effect of solvent (water in the present case) on the crystal packing. The calculation of the lattice energy reveals that the anhydrous form is 7 kcal/mol more stable than the corresponding hydrate. The major stabilization towards the crystal packing were observed to come from strong O–H···O=C hydrogen bonds (9 kcal/mol) in case of the anhydrous form while in case of its hydrate, water acts as both an acceptor and a donor of the hydrogen bonds, the interaction energy ranging from 5 to 9 kcal/mol. The weak C–H···O hydrogen bond were found to be the second highest contributor (I.E = 3.5–5.5 kcal/mol) towards the stabilization of the packing in both the crystal structures. The main differences in the crystal packing were observed in the presence of weaker interactions in their crystal packing. The weak C–H···π, O(lp)···C=O interactions were observed in the crystal packing of the anhydrous form while the π···π, O(lp)···π interactions stabilize the crystal packing in case of its hydrate. This phenomenon were further well supported by the analysis of the Hirshfeld surfaces mapped with different properties, 2D-fingerprint plots, electrostatic potential mapped on the Hirshfeld surface and electron density isosurface (calculated by ab initio calculation at DFT-D3/B97-D) at both solid state and optimized geometry.
引用
收藏
页码:281 / 295
页数:14
相关论文
共 162 条
[1]  
Yadav VR(2012)3-Formylchromone interacts with cysteine 38 in p65 protein and with cysteine 179 in IκBα kinase, leading to down-regulation of nuclear factor-κB (NF-κB)-regulated gene products and sensitization of tumor cells J Biol Chem 287 245-256
[2]  
Prasad S(2006)6-Acyl-4-aryl/alkyl-5,7-dihydroxycoumarins as anti-inflammatory agents Bioorg Med Chem 14 4402-4409
[3]  
Gupta SC(2005)Studies on structure activity relationship of some dihydroxy-4-methylcoumarin antioxidants based on their interaction with Fe(III) and ADP Biometals 18 143-154
[4]  
Sung B(2004)Synthesis of some biologically active pyrazole, thiazolidine and azetidinone derivatives Chem Heterocycl Comp 440 257-264
[5]  
Phatak SS(1998)DNA cross-linking agents as antitumor drugs Chem Rev 98 2723-2796
[6]  
Zhang S(1996)Synthesis and antitumor activity of some analogues of flavone acetic acid Anti-cancer Drug Des 11 243-252
[7]  
Aggarwal BB(2004)Acetylcholinesterase inhibitory activity of scopolin and scopoletin discovered by virtual screening of natural products J Med Chem 47 6248-6254
[8]  
Lin CM(2003)Formylchromone derivatives as a novel class of protein tyrosine phosphatase 1B inhibitors Bioorg Med Chem Lett 13 2561-2563
[9]  
Huang ST(2001)Coumarins derivatives as dual inhibitors of acetylcholinesterase and monoamine oxidase J Med Chem 44 3195-3198
[10]  
Lee FW(2003)Studies on the synthesis and spectra characteristics of stilbenylcoumarin organic materials Dyes Pigm 56 189-194