Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software

被引:0
作者
Xinsong Du
Farhad Dastmalchi
Hao Ye
Timothy J. Garrett
Matthew A. Diller
Mei Liu
William R. Hogan
Mathias Brochhausen
Dominick J. Lemas
机构
[1] University of Florida College of Medicine,Department of Health Outcomes and Biomedical Informatics
[2] University of Florida,Health Science Center Libraries
[3] University of Florida,Department of Pathology, Immunology and Laboratory Medicine, College of Medicine
[4] University of Arkansas for Medical Sciences,Department of Biomedical Informatics, College of Medicine
[5] University of Florida College of Medicine,Department of Obstetrics and Gynecology
[6] University of Florida College of Medicine, Center for Perinatal Outcomes Research
来源
Metabolomics | / 19卷
关键词
FAIR principles; Metabolomics; Research software; Liquid chromatography-mass spectrometry; Open science; Reproducibility;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 616 条
  • [1] Adusumilli R(2017)Data Conversion with ProteoWizard msConvert. (Clifton N J) 1550 339-368
  • [2] Mallick P(2021)Statement frequency coverage: a code coverage criterion for assessing test suite effectiveness Information and Software Technology 129 106426-1340
  • [3] Aghamohammadi A(2011)AStream: an R package for annotating LC/MS metabolomic data Bioinformatics 27 1339-6817
  • [4] Mirian-Hosseinabadi SH(2014)RAMClust: a Novel feature clustering method enables spectral-matching-based annotation for Metabolomics Data Analytical Chemistry 86 6812-9526
  • [5] Jalali S(2016)Large-scale untargeted LC-MS metabolomics data correction using between-batch feature alignment and cluster-based within-batch signal intensity drift correction Metabolomics: Official Journal of the Metabolomic Society 12 173-1586
  • [6] Alonso A(2017)MetExtract II: a Software suite for stable isotope-assisted untargeted metabolomics Analytical Chemistry 89 9518-628
  • [7] Julià A(2015)An integrated targeted metabolomic platform for high-throughput metabolite profiling and automated data processing Metabolomics 11 1575-283
  • [8] Beltran A(2016)geoRge: a computational Tool to detect the Presence of stable isotope labeling in LC/MS-Based untargeted metabolomics Analytical Chemistry 88 621-4314
  • [9] Vinaixa M(2013)mzMatch–ISO: an R tool for the annotation and relative quantification of isotope-labelled mass spectrometry data Bioinformatics 29 281-1049
  • [10] Díaz M(2018)MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data Bioinformatics 34 4313-3255