Pseudomonas Aeruginosa bacteriophage SN: 3D-reconstruction of the capsid and identification of surface proteins by electron microscopy

被引:0
作者
M. V. Filchikov
D. I. Osmakov
L. V. Logovskaya
N. N. Sykilinda
V. A. Kadykov
L. P. Kurochkina
V. V. Mesyanzhinov
R. A. Bernal
K. A. Miroshnikov
机构
[1] Russian Academy of Science,M.M. Shemyakin — Yu.A. Ovchinnikov Institute of Bioorganic Chemistry
[2] The University of Texas at El Paso,Department of Chemistry
来源
Russian Journal of Bioorganic Chemistry | 2009年 / 35卷
关键词
Pseudomonas aeruginosa; bacteriophage SN; proteomics; structural proteins; cryo-electron microscopy; 3D-reconstruction; immuno-electron microscopy;
D O I
暂无
中图分类号
学科分类号
摘要
The virulent Pseudomonas aeruginosa bacteriophage SN belongs to the PB1-like species of the Myoviridae family. The comparatively small (66,391 bp) DNA genome of this phage encodes 89 predicted open reading frames and the proteome involves more than 20 structural proteins. A 3D model of the phage capsid to approximately 18 Å resolution reveals certain peculiarities of capsomer structure typical of only this bacteriophage species. In the present work recombinant structural proteins SN gp22 and gp29 were expressed and purified; and specific polyclonal antibodies were obtained. Immuno-electron microscopy of purified phage SN using secondary gold-conjugated antibodies has revealed that gp29 forms a phage sheath, and gp22 decorates the capsid. Precise identification of multicopy major capsid proteins is essential for subsequent construction of gene-engineered phages bearing non-native peptides on their surfaces (phage display).
引用
收藏
页码:728 / 733
页数:5
相关论文
共 38 条
[21]   Electron Microscopy and 3D Reconstruction Reveals Filamin Ig Domain Binding to F-Actin [J].
Suphamungmee, Worawit ;
Nakamura, Fumihiko ;
Hartwig, John H. ;
Lehman, William .
JOURNAL OF MOLECULAR BIOLOGY, 2012, 424 (05) :248-256
[22]   3D SURFACE RECONSTRUCTION AND ANALYSIS IN AUTOMATED APPLE STEM-END/CALYX IDENTIFICATION [J].
Jiang, L. ;
Zhu, B. ;
Cheng, X. ;
Luo, Y. ;
Tao, Y. .
TRANSACTIONS OF THE ASABE, 2009, 52 (05) :1775-1784
[23]   3D reconstruction and scanning electron microscopy of salivary glands of the millipede Rhinocricus padbergi (Verhoef, 1938) (Diplopoda: Spirobolida) [J].
Camargo-Mathias, M. I. ;
Fantazzini, E. R. ;
Fontanetti, C. S. ;
Calligaris, I. B. .
MICRON, 2011, 42 (03) :271-274
[24]   3-D reconstruction based on single-particle cryo electron microscopy images as a random signal in noise problem [J].
Wang, Qiu ;
Zheng, Yili ;
Doerschuk, Peter C. .
COMPUTATIONAL IMAGING X, 2012, 8296
[25]   STOCHASTIC 3-D SIGNAL RECONSTRUCTION FROM NOISY PROJECTION DATA FOR HETEROGENEOUS INSTANCES OF OBJECTS IN ELECTRON MICROSCOPY IMAGERY [J].
Zheng, Yili ;
Wang, Qiu ;
Doerschuk, Peter C. .
2011 8TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, 2011, :918-921
[26]   Deep learning-based 3D reconstruction of ancient buildings with surface damage identification and localization [J].
Zhu, Xundiao ;
Zhu, Qiankun ;
Zhang, Qiong ;
Du, Yongfeng .
STRUCTURES, 2025, 73
[27]   Accelerated antibiotic susceptibility testing of pseudomonas aeruginosa by monitoring extracellular electron transfer on a 3-D paper-based cell culture platform [J].
Rafiee, Zahra ;
Rezaie, Maryam ;
Choi, Seokheun .
BIOSENSORS & BIOELECTRONICS, 2022, 216
[28]   Reconstruction of Stochastic 3D Signals With Symmetric Statistics From 2D Projection Images Motivated by Cryo-Electron Microscopy [J].
Xu, Nan ;
Doerschuk, Peter C. .
IEEE TRANSACTIONS ON IMAGE PROCESSING, 2019, 28 (11) :5479-5494
[29]   Surface imaging microscopy using an ultramiller for large volume 3D reconstruction of wax- and resin-embedded tissues [J].
Gerneke, Dane A. ;
Sands, Gregory B. ;
Ganesalingam, Ramanujan ;
Joshi, Purva ;
Caldwell, Bryan J. ;
Smaill, Bruce H. ;
Legrice, Ian J. .
MICROSCOPY RESEARCH AND TECHNIQUE, 2007, 70 (10) :886-894
[30]   Towards 3D crystal orientation reconstruction using automated crystal orientation mapping transmission electron microscopy (ACOM-TEM) [J].
Kobler, Aaron ;
Kuebel, Christian .
BEILSTEIN JOURNAL OF NANOTECHNOLOGY, 2018, 9 :602-607