Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts

被引:0
|
作者
Joern Toedling
Oleg Sklyar
Wolfgang Huber
机构
[1] EMBL European Bioinformatics Institute,
来源
BMC Bioinformatics | / 8卷
关键词
Bioconductor Package; Extension Package; Methodical Scope; Bioconductor Project; Genomic Data Analysis;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [31] Genome-Wide Occupancy Analysis by ChIP-chip and ChIP-Seq
    Hao, Hong
    RETINAL DEGENERATIVE DISEASES, 2012, 723 : 753 - 759
  • [32] A flexible and powerful bayesian hierarchical model for ChIP-chip experiments
    Gottardo, Raphael
    Li, Wei
    Johnson, W. Evan
    Liu, X. Shirley
    BIOMETRICS, 2008, 64 (02) : 468 - 478
  • [33] ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis
    Joshua WK Ho
    Eric Bishop
    Peter V Karchenko
    Nicolas Nègre
    Kevin P White
    Peter J Park
    BMC Genomics, 12
  • [34] Parameter estimation for robust HMM analysis of ChIP-chip data
    Humburg, Peter
    Bulger, David
    Stone, Glenn
    BMC BIOINFORMATICS, 2008, 9 (1)
  • [35] Quantized correlation coefficient for measuring reproducibility of ChIP-chip data
    Peng, Shouyong
    Kuroda, Mitzi I.
    Park, Peter J.
    BMC BIOINFORMATICS, 2010, 11
  • [36] NTAP: for NimbleGen tiling array ChIP-chip data analysis
    He, Kun
    Li, Xueyong
    Zhou, Junli
    Deng, Xing-Wang
    Zhao, Hongyu
    Luo, Jingchu
    BIOINFORMATICS, 2009, 25 (14) : 1838 - 1840
  • [37] Quantized correlation coefficient for measuring reproducibility of ChIP-chip data
    Shouyong Peng
    Mitzi I Kuroda
    Peter J Park
    BMC Bioinformatics, 11
  • [38] Parameter estimation for robust HMM analysis of ChIP-chip data
    Peter Humburg
    David Bulger
    Glenn Stone
    BMC Bioinformatics, 9
  • [39] Quantitative Visualization of ChIP-chip Data by Using Linked Views
    Huang, Min-Yu
    Weber, Gunther H.
    Li, Xiao-Yong
    Biggin, Mark D.
    Hamann, Bernd
    2010 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE WORKSHOPS (BIBMW), 2010, : 195 - 200
  • [40] Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays
    Scacheri, Peter C.
    Crawford, Gregory E.
    Davis, Sean
    DNA MICROARRAYS, PART B: DATABASES AND STATISTICS, 2006, 411 : 270 - +