An optimized graph-based structure for single-cell RNA-seq cell-type classification based on non-linear dimension reduction

被引：0
作者：
Saeedeh Akbari Rokn Abadi
Seyed Pouria Laghaee
Somayyeh Koohi
机构：
[1] Sharif University of Technology,Department of Computer Engineering
来源：
BMC Genomics | / 24卷
关键词：
scRNA-seq; Clustering; Graph attention autoencoder; Non-linear dimension reduction;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
[21]   scRFR: imputation of single-cell RNA-seq data based on recurrent feature inference [J].
Zhu, Bangyu ;
Zhang, Shaoqiang ;
Li, Lixuan ;
Qian, Zhizhong .
PROCEEDINGS OF 2024 4TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND INTELLIGENT COMPUTING, BIC 2024, 2024, :420-424
[22]   MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions [J].
Yael Baran ;
Akhiad Bercovich ;
Arnau Sebe-Pedros ;
Yaniv Lubling ;
Amir Giladi ;
Elad Chomsky ;
Zohar Meir ;
Michael Hoichman ;
Aviezer Lifshitz ;
Amos Tanay .
Genome Biology, 20
[23]   A comprehensive comparison of supervised and unsupervised methods for cell type identification in single-cell RNA-seq [J].
Sun, Xiaobo ;
Lin, Xiaochu ;
Li, Ziyi ;
Wu, Hao .
BRIEFINGS IN BIOINFORMATICS, 2022, 23 (02)
[24]   MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions [J].
Baran, Yael ;
Bercovich, Akhiad ;
Sebe-Pedros, Arnau ;
Lubling, Yaniv ;
Giladi, Amir ;
Chomsky, Elad ;
Meir, Zohar ;
Hoichman, Michael ;
Lifshitz, Aviezer ;
Tanay, Amos .
GENOME BIOLOGY, 2019, 20 (01)
[25]   A hybrid deep clustering approach for robust cell type profiling using single-cell RNA-seq data [J].
Srinivasan, Suhas ;
Leshchyk, Anastasia ;
Johnson, Nathan T. ;
Korkin, Dmitry .
RNA, 2020, 26 (10) :1303-1319
[26]   scVGATAE: A Variational Graph Attentional Autoencoder Model for Clustering Single-Cell RNA-seq Data [J].
Liu, Lijun ;
Wu, Xiaoyang ;
Yu, Jun ;
Zhang, Yuduo ;
Niu, Kaixing ;
Yu, Anli .
BIOLOGY-BASEL, 2024, 13 (09)
[27]   MulCNN: An efficient and accurate deep learning method based on gene embedding for cell type identification in single-cell RNA-seq data [J].
Jiao, Linfang ;
Ren, Yongqi ;
Wang, Lulu ;
Gao, Changnan ;
Wang, Shuang ;
Song, Tao .
FRONTIERS IN GENETICS, 2023, 14
[28]   GLAE: A graph-learnable auto-encoder for single-cell RNA-seq analysis [J].
Shan, Yixiang ;
Yang, Jielong ;
Li, Xiangtao ;
Zhong, Xionghu ;
Chang, Yi .
INFORMATION SCIENCES, 2023, 621 :88-103
[29]   SC1: A Tool for Interactive Web-Based Single-Cell RNA-Seq Data Analysis [J].
Moussa, Marmar ;
Mandoiu, Ion I. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2021, 28 (08) :820-841
[30]   ReadZS detects cell type-specific and developmentally regulated RNA processing programs in single-cell RNA-seq [J].
Elisabeth Meyer ;
Kaitlin Chaung ;
Roozbeh Dehghannasiri ;
Julia Salzman .
Genome Biology, 23
12345