Similarity and Dissimilarity Regularized Nonnegative Matrix Factorization for Single-Cell RNA-seq Analysis

[1] Pelkmans L(2012)Using cell-to-cell variability—a new era in molecular biology Science 336 425-426

[2] Papalexi E(2018)Single-cell RNA sequencing to explore immune cell heterogeneity Nat Rev Immunol 18 35-45

[3] Satija R(1987)Principal component analysis Chemom Intell Lab Syst 2 37-52

[4] Wold S(2007)A tutorial on spectral clustering StCom 17 395-416

[5] Esbensen K(2008)Visualizing data using t-SNE J Mach Learn Res 9 2579-2605

[6] Geladi P(2016)Convex sparse spectral clustering: single-view to multi-view ITIP 25 2833-2843

[7] Von Luxburg U(2017)Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning Nat Methods 14 414-2076

[8] Van der Maaten L(2018)Spectral clustering based on learning similarity matrix Bioinformatics 34 2069-3694

[9] Hinton G(2018)Single cell clustering based on cell-pair differentiability correlation and variance analysis Bioinformatics 34 3684-3650

[10] Lu C(2019)SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation Bioinformatics 35 3642-9

[1] Pelkmans L(2012)Using cell-to-cell variability—a new era in molecular biology Science 336 425-426

[2] Papalexi E(2018)Single-cell RNA sequencing to explore immune cell heterogeneity Nat Rev Immunol 18 35-45

[3] Satija R(1987)Principal component analysis Chemom Intell Lab Syst 2 37-52

[4] Wold S(2007)A tutorial on spectral clustering StCom 17 395-416

[5] Esbensen K(2008)Visualizing data using t-SNE J Mach Learn Res 9 2579-2605

[6] Geladi P(2016)Convex sparse spectral clustering: single-view to multi-view ITIP 25 2833-2843

[7] Von Luxburg U(2017)Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning Nat Methods 14 414-2076

[8] Van der Maaten L(2018)Spectral clustering based on learning similarity matrix Bioinformatics 34 2069-3694

[9] Hinton G(2018)Single cell clustering based on cell-pair differentiability correlation and variance analysis Bioinformatics 34 3684-3650

[10] Lu C(2019)SinNLRR: a robust subspace clustering method for cell type detection by non-negative and low-rank representation Bioinformatics 35 3642-9