A new method to measure the semantic similarity from query phenotypic abnormalities to diseases based on the human phenotype ontology

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作者
Xiaofeng Gong
Jianping Jiang
Zhongqu Duan
Hui Lu
机构
[1] SJTU-Yale Joint Center for Biostatistics,Department of Bioinformatics and Biostatistics
[2] Shanghai Jiao Tong University,undefined
来源
BMC Bioinformatics | / 19卷
关键词
Human phenotype ontology (HPO); Semantic similarity; Disease; Diagnosis;
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[1]  
Smedley D(2015)Next-generation diagnostics and disease-gene discovery with the exomiser Nat Protoc 10 2004-2015-D517
[2]  
Jacobsen JO(2005)Online Mendelian inheritance in man (OMIM), a knowledgebase of human genes and genetic disorders Nucleic Acids Res 33 D514-615
[3]  
Jäger M(2003)Orphanet, an information site on rare diseases Soins 672 46-D974
[4]  
Köhler S(2008)The human phenotype ontology: a tool for annotating and analyzing human hereditary disease Am J Hum Genet 83 610-D876
[5]  
Holtgrewe M(2014)The human phenotype ontology project: linking molecular biology and disease through phenotype data Nucleic Acids Res 42 D966-464
[6]  
Schubach M(2017)The human phenotype ontology in 2017 Nucleic Acids Res 45 D865-1065
[7]  
Hamosh A(2009)Clinical diagnostics in human genetics with semantic similarity searches in ontologies Am J Hum Genet 85 457-571
[8]  
Scott AF(2013)PhenoTips: patient phenotyping software for clinical and research use Hum Mutat 34 1057-1084
[9]  
Amberger JS(2013)PhenoDB: a new web-based tool for the collection, storage, and analysis of phenotypic features Hum Mutat 34 566-937
[10]  
Bocchini CA(2013)eXtasy: variant prioritization by genomic data fusion Nat Methods 10 1083-348