Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

[21] Ladiges PY(2014)Combined analysis of the chloroplast genome and transcriptome of the Antarctic vascular plant Deschampsia antarctica Desv PLoS One 9 e92501-45

[22] Ades PK(2017)De novo yeast genome assemblies from MinION PacBio and MiSeq platforms Sci Rep 7 3935-230

[23] Anderson C(2009)ABySS: a parallel assembler for short read sequence data Genome Res 19 1117-115

[24] Zheng YH(2010)De novo assembly of human genomes with massively parallel short read sequencing Genome Res 20 265-52

[25] Alverson AJ(2017)De novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer Gigascience 6 1-782

[26] Wang QF(2016)Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations Sci Rep 6 31602-409

[27] Palmer JD(2017)Fast and accurate de novo genome assembly from long uncorrected reads Genome Res 27 737-450

[28] Li B(2013)An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome BMC Genomics 14 670-626

[29] Cantino PD(2014)A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots BMC Plant Biol 14 289-849

[30] Olmstead RG(2015)Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae BMC Plant Biol 15 196-756

[21] Ladiges PY(2014)Combined analysis of the chloroplast genome and transcriptome of the Antarctic vascular plant Deschampsia antarctica Desv PLoS One 9 e92501-45

[22] Ades PK(2017)De novo yeast genome assemblies from MinION PacBio and MiSeq platforms Sci Rep 7 3935-230

[23] Anderson C(2009)ABySS: a parallel assembler for short read sequence data Genome Res 19 1117-115

[24] Zheng YH(2010)De novo assembly of human genomes with massively parallel short read sequencing Genome Res 20 265-52

[25] Alverson AJ(2017)De novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer Gigascience 6 1-782

[26] Wang QF(2016)Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations Sci Rep 6 31602-409

[27] Palmer JD(2017)Fast and accurate de novo genome assembly from long uncorrected reads Genome Res 27 737-450

[28] Li B(2013)An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome BMC Genomics 14 670-626

[29] Cantino PD(2014)A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the plastid evolution of basal eudicots BMC Plant Biol 14 289-849

[30] Olmstead RG(2015)Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae BMC Plant Biol 15 196-756