DNA like-charge attraction and overcharging by divalent counterions in the presence of divalent co-ions

被引:0
作者
Viet Duc Nguyen
Toan T. Nguyen
Paolo Carloni
机构
[1] VNU University of Science,Faculty of Physics
[2] Vietnam National University,VNU Key Laboratory “Multiscale Simulation of Complex Systems”
[3] VNU University of Science,School of Physics
[4] Vietnam National University,Computational Biomedicine, Institute for Advanced Simulation IAS
[5] Georgia Institute of Technology,5, and Institute of Neuroscience and Medicine INM
[6] Forschungszentrum Julich,9
来源
Journal of Biological Physics | 2017年 / 43卷
关键词
DNA condensation; DNA overcharging; Multivalent counterions; Multivalent coions;
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中图分类号
学科分类号
摘要
Strongly correlated electrostatics of DNA systems has drawn the interest of many groups, especially the condensation and overcharging of DNA by multivalent counterions. By adding counterions of different valencies and shapes, one can enhance or reduce DNA overcharging. In this paper, we focus on the effect of multivalent co-ions, specifically divalent co-ions such as SO42−\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$_{4}^{2-}$\end{document}. A computational experiment of DNA condensation using Monte Carlo simulation in grand canonical ensemble is carried out where the DNA system is in equilibrium with a bulk solution containing a mixture of salt of different valency of co-ions. Compared to systems with purely monovalent co-ions, the influence of divalent co-ions shows up in multiple aspects. Divalent co-ions lead to an increase of monovalent salt in the DNA condensate. Because monovalent salts mostly participate in linear screening of electrostatic interactions in the system, more monovalent salt molecules enter the condensate leads to screening out of short-range DNA–DNA like charge attraction and weaker DNA condensation free energy. The overcharging of DNA by multivalent counterions is also reduced in the presence of divalent co-ions. Strong repulsions between DNA and divalent co-ions and among divalent co-ions themselves lead to a depletion of negative ions near the DNA surface as compared to the case without divalent co-ions. At large distances, the DNA–DNA repulsive interaction is stronger in the presence of divalent co-ions, suggesting that divalent co-ions’ role is not only that of simple stronger linear screening.
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页码:185 / 195
页数:10
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