The optimal standard protocols for whole-genome sequencing of antibiotic-resistant pathogenic bacteria using third-generation sequencing platforms

被引：0
|
作者：
Tae-Min La
Ji-hoon Kim
Taesoo Kim
Hong-Jae Lee
Yoonsuk Lee
Hyunjin Shin
Yongjun Song
Gyuhee Ahn
Won Hur
Joong-Bok Lee
Seung-Yong Park
In-Soo Choi
Sang-Won Lee
机构：
[1] Konkuk University,College of Veterinary Medicine
来源：
Molecular & Cellular Toxicology | 2021年 / 17卷
关键词：
Third-generation sequencing; DNA extraction; MinION; PacBio; Bacteria; Assembly;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
页码：493 / 501
页数：8
相关论文
共 50 条
  • [21] Whole-genome sequencing of a Toxoplasma gondii strain from a Turkish isolate using next-generation sequencing technology
    Yucesan, Banucicek
    Guldemir, Dilek
    Babur, Cahit
    Kilic, Selcuk
    Cakmak, Ayse
    ACTA TROPICA, 2021, 218
  • [22] Whole-genome sequencing and characterization of an antibiotic resistant Neisseria meningitidis B isolate from a military unit in Vietnam
    Thach Xuan Tran
    Trang Thu Le
    Trieu, Long Phi
    Austin, Christopher M.
    Dong Van Quyen
    Huong Minh Nguyen
    ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS, 2019, 18 (1)
  • [23] Whole-genome sequencing of Alcaligenes sp. strain MMA: insight into the antibiotic and heavy metal resistant genes
    Sodhi, Kushneet Kaur
    Singh, Chandra Kant
    Kumar, Mohit
    Singh, Dileep Kumar
    FRONTIERS IN PHARMACOLOGY, 2023, 14
  • [24] Whole-genome sequencing and characterization of an antibiotic resistant Neisseria meningitidis B isolate from a military unit in Vietnam
    Thach Xuan Tran
    Trang Thu Le
    Long Phi Trieu
    Christopher M. Austin
    Dong Van Quyen
    Huong Minh Nguyen
    Annals of Clinical Microbiology and Antimicrobials, 18
  • [25] Landscape of genomic alterations in patients with chemoradiation resistant cervical cancer using whole-genome sequencing
    Kumar, Prashant
    Chauhan, Richa
    Trivedi, Vinita
    Dhawale, Ekta R.
    Sambath, Janani
    George, Irene A.
    Manda, Srikanth S.
    Ariyannur, Prasanth
    Kommu, Raja Sekhar
    Singh, Manisha
    Venkataramanan, R.
    JOURNAL OF CLINICAL ONCOLOGY, 2024, 42 (16)
  • [26] Landscape of genomic alterations in chemoradiation resistant cervical cancer patients using whole-genome sequencing
    Kumar, P.
    Chauhan, R.
    Trivedi, V.
    Dhawale, E.
    Sambath, J.
    George, I. A.
    Manda, S. S.
    Kommu, R. S.
    Singh, M.
    Venkataramanan, R.
    ANNALS OF ONCOLOGY, 2024, 35
  • [27] Whole-genome sequencing of Bacillus velezensis LS69, a strain with a broad inhibitory spectrum against pathogenic bacteria
    Liu, Guoqiang
    Kong, Yingying
    Fan, Yajing
    Geng, Ce
    Peng, Donghai
    Sun, Ming
    JOURNAL OF BIOTECHNOLOGY, 2017, 249 : 20 - 24
  • [28] Whole genome sequencing analysis on antibiotic-resistant Escherichia coli isolated from pig farms in Banten Province, Indonesia
    Latif, Hadri
    Pazra, Debby Fadhilah
    Basri, Chaerul
    Wibawan, I. Wayan Teguh
    Rahayu, Puji
    JOURNAL OF VETERINARY SCIENCE, 2024, 25 (03)
  • [29] Optimization of whole-genome amplification for analysis of single cells using next-generation sequencing
    Amiss, Terry J.
    Tong, Frances
    Snowden, Eileen
    Kelly, Richard
    Blaesius, Rainer
    Herrmann, Nick
    Hahn, Friedrich
    Porter, Warren
    Ferguson, Mitchell
    Chang, Chen
    Clancy, Daphne
    Jurgensen, Stewart
    CLINICAL CANCER RESEARCH, 2015, 21
  • [30] Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing
    Irvine, Danielle V.
    Goto, Derek B.
    Vaughn, Matthew W.
    Nakaseko, Yukinobu
    McCombie, W. Richard
    Yanagida, Mitsuhiro
    Martienssen, Rob
    GENOME RESEARCH, 2009, 19 (06) : 1077 - 1083
12345