Metrics for GO based protein semantic similarity: a systematic evaluation

被引:0
作者
Catia Pesquita
Daniel Faria
Hugo Bastos
António EN Ferreira
André O Falcão
Francisco M Couto
机构
[1] Faculdade de Ciências da Universidade de Lisboa,XLDB, Departamento de Informática
[2] Faculdade de Ciências da Universidade de Lisboa,Centro de Química e Bioquímica, Departmento de Química e Bioquimica
来源
BMC Bioinformatics | / 9卷
关键词
Gene Ontology; Semantic Similarity; Full Dataset; Electronic Annotation; Lower Common Ancestor;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
[31]   Overview of the Evaluation of Semantic Similarity and Textual Inference [J].
Fonseca, Erick Rocha ;
dos Santos, Leandro Borges ;
Criscuolo, Marcelo ;
Aluisio, Sandra Maria .
LINGUAMATICA, 2016, 8 (02) :3-13
[32]   A Semantic Comparison of Clustering Algorithms for the Evaluation of Web-Based Similarity Measures [J].
Franzoni, Valentina ;
Milani, Alfredo .
COMPUTATIONAL SCIENCE AND ITS APPLICATIONS - ICCSA 2016, PT V, 2016, 9790 :438-452
[33]   Evaluation of semantic similarity using vector space model based on textual corpus [J].
Hssina, Badr ;
Bouikhalene, Belaid ;
Merbouha, Abdelkrim .
2016 13TH INTERNATIONAL CONFERENCE ON COMPUTER GRAPHICS, IMAGING AND VISUALIZATION (CGIV), 2016, :295-300
[34]   Applying semantic similarity measures based on information content in the evaluation of a domain ontology [J].
Hernandez Garcia, Aimee Cecilia ;
Tovar Vidal, Mireya ;
Lavalle Martinez, Jose de Jesus .
2018 17TH MEXICAN INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE (MICAI 2018), 2018, :8-12
[35]   Semantic similarity based evaluation for C programs through the use of symbolic execution [J].
Arifi, Sara Mernissi ;
Zahi, Azeddine ;
Benabbou, Rachid .
PROCEEDINGS OF 2016 IEEE GLOBAL ENGINEERING EDUCATION CONFERENCE (EDUCON2016), 2016, :826-833
[36]   Text Similarity Based on Semantic Analysis [J].
Wang, Junli ;
Zhou, Qing ;
Sun, Guobao .
PROCEEDINGS OF THE 2016 2ND INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE AND INDUSTRIAL ENGINEERING (AIIE 2016), 2016, 133 :303-307
[37]   Measuring Semantic Similarity Based On WordNet [J].
Zhao, Zhongcheng ;
Yan, Jianzhuo ;
Fang, Liying ;
Wang, Pu .
2009 SIXTH WEB INFORMATION SYSTEMS AND APPLICATIONS CONFERENCE, PROCEEDINGS, 2009, :89-92
[38]   IDENTIFICATION OF DROUGHT-INDUCED TRANSCRIPTION FACTORS IN Sorghum bicolor USING GO TERM SEMANTIC SIMILARITY [J].
Sekhwal, Manoj Kumar ;
Swami, Ajit Kumar ;
Sharma, Vinay ;
Sarin, Renu .
CELLULAR & MOLECULAR BIOLOGY LETTERS, 2015, 20 (01) :1-23
[39]   Filtering Gene Ontology semantic similarity for identifying protein complexes in large protein interaction networks [J].
Jian Wang ;
Dong Xie ;
Hongfei Lin ;
Zhihao Yang ;
Yijia Zhang .
Proteome Science, 10
[40]   Semantic Similarity Based Video Reranking [J].
Sang, Miaojie ;
Sun, Zhonghua ;
Jia, Kebin .
2015 INTERNATIONAL CONFERENCE ON COMPUTATIONAL INTELLIGENCE AND COMMUNICATION NETWORKS (CICN), 2015, :1420-1423