Metrics for GO based protein semantic similarity: a systematic evaluation

被引：0
作者：
Catia Pesquita
Daniel Faria
Hugo Bastos
António EN Ferreira
André O Falcão
Francisco M Couto
机构：
[1] Faculdade de Ciências da Universidade de Lisboa,XLDB, Departamento de Informática
[2] Faculdade de Ciências da Universidade de Lisboa,Centro de Química e Bioquímica, Departmento de Química e Bioquimica
来源：
BMC Bioinformatics | / 9卷
关键词：
Gene Ontology; Semantic Similarity; Full Dataset; Electronic Annotation; Lower Common Ancestor;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] A New Method Based on Semantic Similarity between GO Terms to Predict Gene Functions
    Han, Xuhong
    Wang, Hanshi
    Du, Chao
    Song, Wei
    Liu, Lizhen
    PROCEEDINGS OF 2015 6TH IEEE INTERNATIONAL CONFERENCE ON SOFTWARE ENGINEERING AND SERVICE SCIENCE, 2015, : 660 - 663
  • [22] Combining Knowledge Graphs with Semantic Similarity Metrics for Sentiment Analysis
    Swedrak, Piotr
    Adrian, Weronika T.
    Kluza, Krzysztof
    KNOWLEDGE SCIENCE, ENGINEERING AND MANAGEMENT, PT I, 2022, 13368 : 489 - 501
  • [23] Explaining protein-protein interactions with knowledge graph-based semantic similarity
    Sousa, Rita T.
    Silva, Sara
    Pesquita, Catia
    COMPUTERS IN BIOLOGY AND MEDICINE, 2024, 170
  • [24] Protein-protein interaction inference based on semantic similarity of Gene Ontology terms
    Zhang, Shu-Bo
    Tang, Qiang-Rong
    JOURNAL OF THEORETICAL BIOLOGY, 2016, 401 : 30 - 37
  • [25] Semantic Similarity Based on Taxonomies
    De Nicola, Antonio
    Formica, Anna
    Mele, Ida
    Taglino, Francesco
    APPLIED SCIENCES-BASEL, 2023, 13 (21):
  • [26] AN IMPROVED METHOD FOR MEASURING CONCEPT SEMANTIC SIMILARITY COMBINING MULTIPLE METRICS
    Sun, Kaifeng
    Ji, Yong
    Rui, Lanlan
    Qiu, Xuesong
    2013 5TH IEEE INTERNATIONAL CONFERENCE ON BROADBAND NETWORK & MULTIMEDIA TECHNOLOGY (IC-BNMT), 2013, : 268 - 272
  • [27] Predicting False Positives of Protein-Protein Interaction Data by Semantic Similarity Measures
    Montanez, George
    Cho, Young-Rae
    CURRENT BIOINFORMATICS, 2013, 8 (03) : 339 - 346
  • [28] Measure the Semantic Similarity of GO Terms Using Aggregate Information Content
    Song, Xuebo
    Li, Lin
    Srimani, Pradip K.
    Yu, Philip S.
    Wang, James Z.
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2014, 11 (03) : 468 - 476
  • [29] Exploring protein networks with a semantic similarity measure across Gene Ontology
    Lubovac, Z
    Gamalielsson, J
    Olsson, B
    Lindlöf, A
    PROCEEDINGS OF THE 8TH JOINT CONFERENCE ON INFORMATION SCIENCES, VOLS 1-3, 2005, : 1203 - 1208
  • [30] Protein function prediction: towards integration of similarity metrics
    Erdin, Serkan
    Lisewski, Andreas Martin
    Lichtarge, Olivier
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2011, 21 (02) : 180 - 188
12345