Bacterial community structure and activity in fish farm sediments of the Ligurian sea (Western Mediterranean)

The environmental impact of a well-established fish farm has beeninvestigated in surface sediments of the Ligurian Sea in order to assess thebiodeposition, bacterial community structure and dynamics at a mature stage oforganic enrichment.The Biopolymeric carbon (BPC) fraction of organic matter and phytopigmentconcentrations displayed very high values beneath the fish cages. In particularlipid, carbohydrate and chlorophyll-a concentrations werehigher in farm sediment while protein concentrations did not show significantchange between farm sediment and control.Benthic bacteria were closely related to organic enrichment and their densitywas three times higher (up to 3 × 1010 cellsg−1) in stations beneath the cages being positivelycorrelated with BPC (n = 10, p < 0.05) and lipid (n = 10, p < 0.05)concentrations. Colony forming units (CFU) counts of heterotrophic bacteriaindicate a shift in the relative importance of the gram negative bacterialfraction, displaying the predominance of theCytophaga/Flexibacter-like bacteria (CBF), as well as theoccurrence of pathogenic bacteria (such as Vibrio) insediments beneath the farm. In contrast, Gram positive bacteria were moreprevalent in control site where they represented up to 90% of total isolates.Aminopeptidase activity displayed higher values in sediment beneath the cages,whereas the enzymatic activity per bacterial cell was lower. These data suggesta functional stress of bacterial degradation rates and represent a potentialvaluable environmental index of imbalance between supply and removal of organicmatter in eutrophicated environments.Data presented in this study also suggest that either the biochemicalcomposition of sedimentary organic matter as well as the selected microbialvariables may represent useful tools for evaluating the effects of organicenrichment due to fish farming and could be proposed as new environmentalindices of aquaculture impact on marine sediment.