Comparative modelling of protein structure and its impact on microbial cell factories

被引:0
作者
Nuria B Centeno
Joan Planas-Iglesias
Baldomero Oliva
机构
[1] Research Group on Biomedical Informatics (GRIB),Structural Bioinformatics Laboratory
[2] IMIM/UPF. c/ Dr. Aiguader 80.,undefined
来源
Microbial Cell Factories | / 4卷
关键词
Comparative Modeling; Loop Modeling; Protein Structure Prediction; Microbial Cell Factory; Determine Protein Structure;
D O I
暂无
中图分类号
学科分类号
摘要
Comparative modeling is becoming an increasingly helpful technique in microbial cell factories as the knowledge of the three-dimensional structure of a protein would be an invaluable aid to solve problems on protein production. For this reason, an introduction to comparative modeling is presented, with special emphasis on the basic concepts, opportunities and challenges of protein structure prediction. This review is intended to serve as a guide for the biologist who has no special expertise and who is not involved in the determination of protein structure. Selected applications of comparative modeling in microbial cell factories are outlined, and the role of microbial cell factories in the structural genomics initiative is discussed.
引用
收藏
相关论文
共 311 条
[71]  
Sali A(2001)Calcium-stimulated autophosphorylation site of plant chimeric calcium/calmodulin-dependent protein kinase J Biol Chem 276 32940-32947
[72]  
Krogh A(2005)Insights into the structure and regulation of glucokinase from a novel mutation (V62M), which causes maturity-onset diabetes of the young J Biol Chem 280 14105-14113
[73]  
Brown M(2004)Aromatic residues located close to the active center are essential for the catalytic reaction of flap endonuclease-1 from hyperthermophilic archaeon Pyrococcus horikoshii J Biol Chem 279 16687-16696
[74]  
Mian IS(2004)Kinetic interaction analysis of human interleukin 5 receptor alpha mutants reveals a unique binding topology and charge distribution for cytokine recognition J Biol Chem 279 9547-9556
[75]  
Sjolander K(2001)Conservation helps to identify biologically relevant crystal contacts J Mol Biol 313 399-416
[76]  
Haussler D(2003)Protein expression systems for structural genomics and proteomics Curr Opin Chem Biol 7 39-43
[77]  
Shi J(2005)Amylod-like properties of bacterial inclusion bodies J Mol Biol 347 1025-1037
[78]  
Blundell TL(2004)Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications Curr Opin Struct Biol 14 242-249
[79]  
Mizuguchi K(2004)Predicting molecular interactions in silico: II. Protein-protein and protein-drug docking Curr Med Chem 11 91-107
[80]  
Jones DT(2002)Epstein syndrome: another renal disorder with mutations in the nonmuscle myosin heavy chain 9 gene Hum Genet 110 182-186