Computer simulation of plastocyanin-cytochrome f complex formation in the thylakoid lumen

Plastocyanin diffusion in the thylakoid lumen and its binding to cytochrome f (a subunit of the membrane b 6 f complex) were studied with a direct multiparticle simulation model that could also take account of their electrostatic interaction. Experimental data were used to estimate the model parameters for plastocyanin-cytochrome f complexing in solution. The model was then employed to assess the dependence of the association rate constant on the dimensions of the lumen. Highest rates were obtained at a lumen span of 8-10 nm; narrowing of the lumen below 7 nm resulted in drastic deceleration of complexing. This corresponded to the experimentally observed effect of hyperosmotic stress on the interaction between plastocyanin and cytochrome f in thylakoids. © 2008 Pleiades Publishing, Ltd.