Gene expression data classification using topology and machine learning models

Cang Z(2017)Topologynet: topology based deep convolutional and multi-task neural networks for biomolecular property predictions PLoS Comput Biol 13 1-27

Wei G-W(2018)Topological data analysis quantifies biological nano-structure from single molecule localization microscopy bioRxiv 95 14863-14868

Pike JA(2019)Topological data analysis reveals principles of chromosome structure throughout cellular differentiation bioRxiv 10 38316-369

Khan AO(1998)Cluster analysis and display of genome-wide expression patterns Proc Natl Acad Sci 4 339-7270

Pallini C(2016)Clustering algorithms: their application to gene expression data Bioinform Biol Insights 108 7265-13

Thomas SG(2019)A topological data analysis network model of asthma based on blood gene expression profiles bioRxiv 9 13-159

Mund M(2015)Identification of copy number aberrations in breast cancer subtypes using persistence topology Microarrays 18 151-426

Ries J(2011)Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and excellent survival Proc Natl Acad Sci 8 16477-21

Poulter NS(2008)A comparative study of different machine learning methods on microarray gene expression data BMC Genom 15 1006826-1182

Styles IB(2017)Gene expression based cancer classification Egypt Inform J 47 419-2830

Cang Z(2017)Topologynet: topology based deep convolutional and multi-task neural networks for biomolecular property predictions PLoS Comput Biol 13 1-27

Wei G-W(2018)Topological data analysis quantifies biological nano-structure from single molecule localization microscopy bioRxiv 95 14863-14868

Pike JA(2019)Topological data analysis reveals principles of chromosome structure throughout cellular differentiation bioRxiv 10 38316-369

Khan AO(1998)Cluster analysis and display of genome-wide expression patterns Proc Natl Acad Sci 4 339-7270

Pallini C(2016)Clustering algorithms: their application to gene expression data Bioinform Biol Insights 108 7265-13

Thomas SG(2019)A topological data analysis network model of asthma based on blood gene expression profiles bioRxiv 9 13-159

Mund M(2015)Identification of copy number aberrations in breast cancer subtypes using persistence topology Microarrays 18 151-426

Ries J(2011)Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and excellent survival Proc Natl Acad Sci 8 16477-21

Poulter NS(2008)A comparative study of different machine learning methods on microarray gene expression data BMC Genom 15 1006826-1182

Styles IB(2017)Gene expression based cancer classification Egypt Inform J 47 419-2830