Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

被引:0
|
作者
Ratan Chopra
Gloria Burow
Chad Hayes
Yves Emendack
Zhanguo Xin
John Burke
机构
[1] Cropping Systems Research Laboratory,Plant Stress & Germplasm Development Unit
[2] USDA-ARS,undefined
来源
BMC Genomics | / 16卷
关键词
Cold stress; Sorghum; Transcriptome profiling; RNAseq; Single nucleotide polymorphism; Gene based variants;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 20 条
  • [11] Development and Validation of Single Nucleotide Polymorphisms (SNPs) Markers from Two Transcriptome 454-Runs of Turbot (Scophthalmus maximus) Using High-Throughput Genotyping
    Vera, Manuel
    Alvarez-Dios, Jose-Antonio
    Fernandez, Carlos
    Bouza, Carmen
    Vilas, Roman
    Martinez, Paulino
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2013, 14 (03): : 5694 - 5711
  • [12] DNA-repair gene (DRG) single nucleotide polymorphisms (SNPs) influence on response and survival in stage IVSCCHN patients treated with COOP-based therapy.
    Quintela-Fandino, M.
    Hitt, R.
    Medina, P. P.
    Gamarra, S.
    Amador, M.
    Manso, L.
    Funes, H. Cortes
    Sanchez-Cespedes, M.
    JOURNAL OF CLINICAL ONCOLOGY, 2006, 24 (18) : 281S - 281S
  • [13] Ethnic variation in risk genotypes based on single nucleotide polymorphisms (SNPs) of the interferon-inducible transmembrane 3 (IFITM3) gene, a susceptibility factor for pandemic 2009 H1N1 influenza A virus
    Yong-Chan Kim
    Byung-Hoon Jeong
    Immunogenetics, 2020, 72 : 447 - 453
  • [14] Ethnic variation in risk genotypes based on single nucleotide polymorphisms (SNPs) of the interferon-inducible transmembrane 3 (IFITM3) gene, a susceptibility factor for pandemic 2009 H1N1 influenza A virus
    Kim, Yong-Chan
    Jeong, Byung-Hoon
    IMMUNOGENETICS, 2020, 72 (9-10) : 447 - 453
  • [15] Allele frequencies of single nucleotide polymorphisms (SNPs) in 40 candidate genes for gene-environment studies on cancer: data from population-based Japanese random samples
    Kimio Yoshimura
    Tomoyuki Hanaoka
    Shumpei Ohnami
    Sumiko Ohnami
    Takashi Kohno
    Ying Liu
    Teruhiko Yoshida
    Hiromi Sakamoto
    Shoichiro Tsugane
    Journal of Human Genetics, 2003, 48 : 654 - 658
  • [16] Allele frequencies of single nucleotide polymorphisms (SNPs) in 38 candidate genes for gene-environment studies on cancer: data from population-based Japanese random samples
    Yoshimura, K
    Hanaoka, T
    Ohnami, S
    Ohnami, S
    Kohno, T
    Liu, Y
    Yoshida, T
    Sakamoto, H
    Tsugane, S
    AMERICAN JOURNAL OF HUMAN GENETICS, 2003, 73 (05) : 256 - 256
  • [17] Allele frequencies of single nucleotide polymorphisms (SNPs) in 40 candidate genes for gene-environment studies on cancer: data from population-based Japanese random samples
    Yoshimura, K
    Hanaoka, T
    Ohnami, S
    Ohnami, S
    Kohno, T
    Liu, Y
    Yoshida, T
    Sakamoto, H
    Tsugane, S
    JOURNAL OF HUMAN GENETICS, 2003, 48 (12) : 654 - 658
  • [18] Donor and Recipient Genotypes for Interleukin 1 Gene Single Nucleotide Polymorphisms (SNPs) Allow Anticipation of Acute Graft Versus Host Disease after HLA-Identical Allogeneic Stem Cell Transplantation (allo-SCT)
    Buces, Elena
    Martinez-Laperche, Carolina
    Gonzalez-Rivera, Milagros
    Bosch-Vizcaya, Anna
    Martin-Antonio, Beatriz
    Guillem, Vicent
    Nieto, Jose B.
    Gonzalez, Marcos
    De La Camara, Rafael
    Brunet, Salut
    Jimenez-Velasco, Antonio
    Espigado, Ildefonso
    Vallejo, Carlos
    Sampol, Antonia
    Maria Bellon, Jose
    Serrano, David
    Kwon, Mi
    Gayoso, Jorge
    Pascual, Balsalobre
    Urbano-Izpizua, Alvaro
    Solano, Carlos
    Gallardo, David
    Diez Martin, Jose Luis
    Buno, Ismael
    BLOOD, 2014, 124 (21)
  • [19] Validation of two multiplex real-time PCR assays based on single nucleotide polymorphisms of the HA1 gene of equine influenza A virus in order to differentiate between clade 1 and clade 2 Florida sublineage isolates
    Brister, Hanna
    Barnum, Samantha M.
    Reedy, Stephanie
    Chambers, Thomas M.
    Pusterla, Nicola
    JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION, 2019, 31 (01) : 137 - 141
  • [20] Toll-like receptor 4 gene single nucleotide polymorphisms influence early immune reconstitution after allogeneic haematopoietic stem cell transplantation;: based on NOD2/CARD15 8,12,13, TLR4(299), TLR4(399), TLR5(1174) and IL23R SNPs analysis in 70 donor
    Holowiecka-Goral, A.
    Giebel, S.
    Czerw, T.
    Grudziecka-Pietruszka, E.
    Dziaczkowska, J.
    Krawczyk-Kulis, M.
    Wojnar, J.
    Stella-Holowiecka, B.
    Holowiecki, J.
    BONE MARROW TRANSPLANTATION, 2008, 41 : S198 - S198