DAMEfinder: a method to detect differential allele-specific methylation

[21] Tomkova M(2016)Mechanisms and disease associations of haplotype-dependent allele-specific DNA methylation Epigenetics 11 24-3375

[22] Reddington JP(2011)Tissue-specific patterns of allelically-skewed DNA methylation Blood 118 3367-1325

[23] Pennings S(2004)Identification of a specific intronic PEAR1 gene variant associated with greater platelet aggregability and protein expression Nat Genet 36 1319-41

[24] Meehan RR(2012)Polymorphisms in FKBP5 are associated with increased recurrence of depressive episodes and rapid response to antidepressant treatment Nat Neurosci 16 33-399

[25] Ferguson-Smith AC(2009)Allele-specific FKBP5 DNA demethylation mediates gene-childhood trauma interactions Genome Biol 10 138-785

[26] Tucci V(2009)Non-imprinted allele-specific DNA methylation on human autosomes Nucl Acids Res 38 391-203

[27] Isles AR(2008)MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome Nat Biotechnol 26 779-19

[28] Kelsey G(2010)A bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis Nat Rev Genet 11 191-7

[29] Ferguson-Smith AC(2017)Principles and challenges of genome-wide DNA methylation analysis Genome Biol 18 50-753

[30] Knoll JHM(2018)Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome Nat Genet 50 12-9

[21] Tomkova M(2016)Mechanisms and disease associations of haplotype-dependent allele-specific DNA methylation Epigenetics 11 24-3375

[22] Reddington JP(2011)Tissue-specific patterns of allelically-skewed DNA methylation Blood 118 3367-1325

[23] Pennings S(2004)Identification of a specific intronic PEAR1 gene variant associated with greater platelet aggregability and protein expression Nat Genet 36 1319-41

[24] Meehan RR(2012)Polymorphisms in FKBP5 are associated with increased recurrence of depressive episodes and rapid response to antidepressant treatment Nat Neurosci 16 33-399

[25] Ferguson-Smith AC(2009)Allele-specific FKBP5 DNA demethylation mediates gene-childhood trauma interactions Genome Biol 10 138-785

[26] Tucci V(2009)Non-imprinted allele-specific DNA methylation on human autosomes Nucl Acids Res 38 391-203

[27] Isles AR(2008)MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome Nat Biotechnol 26 779-19

[28] Kelsey G(2010)A bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis Nat Rev Genet 11 191-7

[29] Ferguson-Smith AC(2017)Principles and challenges of genome-wide DNA methylation analysis Genome Biol 18 50-753

[30] Knoll JHM(2018)Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome Nat Genet 50 12-9