Genion, an accurate tool to detect gene fusion from long transcriptomics reads

被引:0
作者
Fatih Karaoglanoglu
Cedric Chauve
Faraz Hach
机构
[1] Simon Fraser University,School of Computing Science
[2] Vancouver Prostate Centre,Department of Mathematics
[3] Simon Fraser University,Department of Urologic Sciences
[4] The University of British Columbia,undefined
来源
BMC Genomics | / 23卷
关键词
Gene fusion detection; Long-read sequencing; Transcriptomics; Dynamic programming;
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[1]  
Long M(2000)A new function evolved from gene fusion Genome Res 10 1655-57
[2]  
Wu H(2019)Gene fusions and chimeric RNAs, and their implications in cancer Genes Dis 6 385-90
[3]  
Li X(2009)Molecular biology of bcr-abl1-positive chronic myeloid leukemia Blood 113 1619-30
[4]  
Li H(2016)The Philadelphia chromosome in leukemogenesis Chin J Cancer 35 48-67
[5]  
Quintás-Cardama A(2011)Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing Genome Res 21 56-11
[6]  
Cortes J(2009)Prevalence of TMPRSS2-ERG fusion prostate cancer among men undergoing prostate biopsy in the United States Clin Cancer Res 15 4706-9
[7]  
Kang ZJ(2007)TMPRSS2:ERG gene fusion associated with lethal prostate cancer in a watchful waiting cohort Oncogene 26 4596-21
[8]  
Liu YF(2007)Newer potential biomarkers in prostate cancer Rev Urol 9 207-72
[9]  
Xu LZ(2019)A tailored approach to fusion transcript identification increases diagnosis of rare inherited disease PLoS ONE 14 1-7
[10]  
Long ZJ(2016)Recurrent chimeric fusion RNAs in non-cancer tissues and cells Nucleic Acids Res 44 2859-33