QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments

被引:0
|
作者
Stephen W. Hartley
James C. Mullikin
机构
[1] National Human Genome Research Institute,Comparative Genomics Analysis Unit, Cancer Genetics and Comparative Genomics Branch
[2] National Institutes of Health,undefined
来源
BMC Bioinformatics | / 16卷
关键词
Quality Control; RNA-Seq; Next-generation sequencing; Differential expression; Differential transcript regulation; Differential splicing;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [31] Performance evaluation of lossy quality compression algorithms for RNA-seq data
    Yu, Rongshan
    Yang, Wenxian
    Wang, Shun
    BMC BIOINFORMATICS, 2020, 21 (01)
  • [32] RNA-seq library preparation for comprehensive transcriptome analysis in cancer cells
    Jaksik, Roman
    Drobna-Sledzinska, Monika
    Dawidowska, Malgorzata
    GENOMICS, 2021, 113 (06) : 4149 - 4162
  • [33] Comprehensive Evaluation of RNA-seq Quantification Methods for Linearity
    Jin, Haijing
    Wan, Ying-Wooi
    Liu, Zhandong
    PROCEEDINGS OF THE 7TH ACM INTERNATIONAL CONFERENCE ON BIOINFORMATICS, COMPUTATIONAL BIOLOGY, AND HEALTH INFORMATICS, 2016, : 539 - 539
  • [34] Comprehensive evaluation of RNA-seq quantification methods for linearity
    Jin, Haijing
    Wan, Ying-Wooi
    Liu, Zhandong
    BMC BIOINFORMATICS, 2017, 18
  • [35] Comprehensive evaluation of RNA-seq quantification methods for linearity
    Haijing Jin
    Ying-Wooi Wan
    Zhandong Liu
    BMC Bioinformatics, 18
  • [36] Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality
    Sprang, Maximilian
    Andrade-Navarro, Miguel A.
    Fontaine, Jean-Fred
    BMC BIOINFORMATICS, 2022, 23 (SUPPL 6)
  • [37] Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality
    Maximilian Sprang
    Miguel A. Andrade-Navarro
    Jean-Fred Fontaine
    BMC Bioinformatics, 23
  • [38] ProkSeq for complete analysis of RNA-Seq data from prokaryotes
    Mahmud, A. K. M. Firoj
    Delhomme, Nicolas
    Nandi, Soumyadeep
    Fallman, Maria
    BIOINFORMATICS, 2021, 37 (01) : 126 - 128
  • [39] Data-based RNA-seq simulations by binomial thinning
    Gerard, David
    BMC BIOINFORMATICS, 2020, 21 (01)
  • [40] Comprehensive RNA-Seq Data Analysis Identifies Key mRNAs and lncRNAs in Atrial Fibrillation
    Wu, Dong-Mei
    Zhou, Zheng-Kun
    Fan, Shao-Hua
    Zheng, Zi-Hui
    Wen, Xin
    Han, Xin-Rui
    Wang, Shan
    Wang, Yong-Jian
    Zhang, Zi-Feng
    Shan, Qun
    Li, Meng-Qiu
    Hu, Bin
    Lu, Jun
    Chen, Gui-Quan
    Hong, Xiao-Wu
    Zheng, Yuan-Lin
    FRONTIERS IN GENETICS, 2019, 10