Removal of redundant contigs from de novo RNA-Seq assemblies via homology search improves accurate detection of differentially expressed genes

[1] Cong L(2013)Multiplex genome engineering using CRISPR/Cas systems Science 339 819-823

[2] Ran FA(2007)Cisgenesis strongly improves introgression breeding and induced translocation breeding of plants Trends Biotechnol 25 219-223

[3] Cox D(2000)Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm Science 287 303-305

[4] Lin S(2014)Transcriptome profiling of genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis BMC Plant Biol 14 94-109

[5] Barretto R(2014)Circadian oscillatory transcriptional programs in grapevine ripening fruits BMC Plant Biol 14 78-93

[6] Habib N(2014)Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments Front Plant Sci 5 22-35

[7] Jacobsen E(2013)Transcriptome analysis of rice root heterosis by RNA-Seq BMC Genomics 14 19-32

[8] Schouten HJ(2014)Identification of candidate genes for drought tolerance by whole-genome resequencing in maize BMC Plant Biol 14 83-97

[9] Ye X(2013)SEPALLATA1/2-suppressed mature apples have low ethylene, high auxin and reduced transcription of ripening-related genes AoB Plants 5 47-56

[10] Al-Babili S(2009)RNA-Seq: a revolutionary tool for transcriptomics Nat Rev Genet 1 57-63

[1] Cong L(2013)Multiplex genome engineering using CRISPR/Cas systems Science 339 819-823

[2] Ran FA(2007)Cisgenesis strongly improves introgression breeding and induced translocation breeding of plants Trends Biotechnol 25 219-223

[3] Cox D(2000)Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm Science 287 303-305

[4] Lin S(2014)Transcriptome profiling of genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis BMC Plant Biol 14 94-109

[5] Barretto R(2014)Circadian oscillatory transcriptional programs in grapevine ripening fruits BMC Plant Biol 14 78-93

[6] Habib N(2014)Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments Front Plant Sci 5 22-35

[7] Jacobsen E(2013)Transcriptome analysis of rice root heterosis by RNA-Seq BMC Genomics 14 19-32

[8] Schouten HJ(2014)Identification of candidate genes for drought tolerance by whole-genome resequencing in maize BMC Plant Biol 14 83-97

[9] Ye X(2013)SEPALLATA1/2-suppressed mature apples have low ethylene, high auxin and reduced transcription of ripening-related genes AoB Plants 5 47-56

[10] Al-Babili S(2009)RNA-Seq: a revolutionary tool for transcriptomics Nat Rev Genet 1 57-63