Reconstruction of gene co-expression network from microarray data using local expression patterns

被引:0
作者
Swarup Roy
Dhruba K Bhattacharyya
Jugal K Kalita
机构
[1] North Eastern Hill University,Dept of Information Technology
[2] Umshing,Dept of Computer Science & Engineering
[3] Tezpur University,Dept of Computer Science
[4] University of Colorado,undefined
来源
BMC Bioinformatics | / 15卷
关键词
Mutual Information; Gene Pair; Adjacency Matrix; Gene Regulatory Network; Regulation Pattern;
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[11]  
Pavlidis P(2003)Inference of transcriptional regulation relationships from gene expression data Bioinformatics 19 905-429
[12]  
Mahanta P(2001)Rich probabilistic models for gene expression Bioinformatics 17 S243-3845
[13]  
Ahmed HA(1998)Cluster analysis and display of genome-wide expression patterns Proc National Academy of Sciences 95 14863-427
[14]  
Bhattacharyya DK(2000)Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements Pac Symp Biocomput 5 418-103
[15]  
Kalita JK(2007)Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles PLoS biology 5 e8-239
[16]  
Luo F(2006)ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context BMC Bioinformatics 7 S7-2504
[17]  
Yang Y(2005)Shifting and scaling patterns from gene expression data Bioinformatics 21 3840-W220
[18]  
Zhong J(2003)Genomic analysis of gene expression relationships in transcriptional regulatory networks TRENDS in Genetics 19 422-38
[19]  
Gao H(2000)Biclustering of expression data Proc of the Eighth Intl Conf on Intelligent Systems for Molecular Biology 8 93-undefined
[20]  
Khan L(2009)Generating realistic in silico gene networks for performance assessment of reverse engineering methods Journal of Computational Biology 16 229-undefined